BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,090,282	C→T	intergenic (+30/‑65)	yggI → / → endA	conserved protein YggI/DNA‑specific endonuclease I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,090,282	0	C	T	100.0%	399.8 / NA	107	intergenic (+30/‑65)	yggI/endA	conserved protein YggI/DNA‑specific endonuclease I
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (55/52); total (55/52)

Only 100 of 107 total aligned reads displayed.

CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT  >  NC_000913/3090235‑3090328

cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                              >  1:2411254/1‑50 (MQ=255)

cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                              <  1:3669313/50‑1 (MQ=255)

cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                              <  1:380286/50‑1 (MQ=255)

cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                              <  1:601568/50‑1 (MQ=255)

cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                              >  1:5790996/1‑50 (MQ=255)

 aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg                                             >  1:6590738/1‑50 (MQ=255)

 aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg                                             >  1:6341080/1‑50 (MQ=255)

 aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg                                             <  1:3888933/50‑1 (MQ=255)

   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           <  1:2691228/50‑1 (MQ=255)

    tGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           >  1:1579037/1‑49 (MQ=255)

    tGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           >  1:2118944/1‑49 (MQ=255)

      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTg                                          <  1:3605531/48‑1 (MQ=255)

      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa                                         <  1:2944215/49‑1 (MQ=255)

      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                        <  1:4004038/50‑1 (MQ=255)

      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                        <  1:6426210/50‑1 (MQ=255)

      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                        >  1:2239734/1‑50 (MQ=255)

        tGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      >  1:843306/1‑50 (MQ=255)

         gcgcAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      >  1:4525283/1‑49 (MQ=255)

         gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      >  1:2221861/1‑49 (MQ=255)

         gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      >  1:6444076/1‑49 (MQ=255)

          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  1:3774717/1‑50 (MQ=255)

           gAAATAACCATCTGAGCTATCAGGAACTTTCCTGATTTGGCTGATTGCAt                                   <  1:3780156/50‑1 (MQ=255)

           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  1:4078626/1‑49 (MQ=255)

            aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa                                  <  1:3800737/50‑1 (MQ=255)

            aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa                                  <  1:6067090/50‑1 (MQ=255)

            aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa                                  >  1:859627/1‑50 (MQ=255)

            aaaTAACCATCTGAACTATCAGGAACTTTACTGATTTGGCTGATTGCATa                                  <  1:550796/50‑1 (MQ=255)

             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 <  1:3891803/50‑1 (MQ=255)

              aTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  1:4230919/1‑49 (MQ=255)

               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc                                >  1:2904611/1‑49 (MQ=255)

               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc                                >  1:708265/1‑49 (MQ=255)

               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa                               <  1:469710/50‑1 (MQ=255)

               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa                               <  1:5280445/50‑1 (MQ=255)

                aaCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa                               >  1:1513136/1‑49 (MQ=255)

                aaCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa                               >  1:1226857/1‑49 (MQ=255)

                 aCCATCTGAACTATCATGAACTTTCCTGATTTGGCTGATTGCATACCaa                              >  1:786987/1‑49 (MQ=39)

                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaa                             <  1:2726033/50‑1 (MQ=255)

                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaa                             <  1:1995812/50‑1 (MQ=255)

                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            <  1:3454001/50‑1 (MQ=255)

                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:4777162/1‑50 (MQ=255)

                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:5063075/1‑50 (MQ=255)

                   cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:4038961/1‑49 (MQ=255)

                   cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:4953117/1‑49 (MQ=255)

                   cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAAc                           <  1:4011615/50‑1 (MQ=255)

                     tCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                         >  1:3415304/1‑50 (MQ=255)

                      cTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                        >  1:1129714/1‑50 (MQ=255)

                      cTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                        >  1:5314332/1‑50 (MQ=255)

                        gAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt                      >  1:5061628/1‑50 (MQ=255)

                        gAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt                      >  1:5488928/1‑50 (MQ=255)

                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                        <  1:3657331/47‑1 (MQ=255)

                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                     <  1:4006966/50‑1 (MQ=255)

                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt                      <  1:1807438/49‑1 (MQ=255)

                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt                      <  1:4044111/49‑1 (MQ=255)

                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt                       <  1:2395849/48‑1 (MQ=255)

                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt                       <  1:3313938/48‑1 (MQ=255)

                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    <  1:4887631/50‑1 (MQ=255)

                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    <  1:6555405/50‑1 (MQ=255)

                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    <  1:2465789/50‑1 (MQ=255)

                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                   <  1:6308759/50‑1 (MQ=255)

                            tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  >  1:2046160/1‑50 (MQ=255)

                            tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  >  1:3175055/1‑50 (MQ=255)

                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCt                 <  1:260547/49‑1 (MQ=255)

                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCt                 <  1:1504853/49‑1 (MQ=255)

                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa                >  1:1030428/1‑50 (MQ=255)

                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa                <  1:1611511/50‑1 (MQ=255)

                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa                >  1:1900030/1‑50 (MQ=255)

                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa                >  1:5268602/1‑50 (MQ=255)

                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               <  1:1644893/49‑1 (MQ=255)

                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               <  1:6134520/49‑1 (MQ=255)

                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg              <  1:2922541/50‑1 (MQ=255)

                                 ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt             >  1:5930992/1‑50 (MQ=255)

                                 ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt             >  1:6732183/1‑50 (MQ=255)

                                  gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt            >  1:358625/1‑50 (MQ=255)

                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg           >  1:3789290/1‑50 (MQ=255)

                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg           >  1:5484351/1‑50 (MQ=255)

                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg           >  1:3186701/1‑50 (MQ=255)

                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg           >  1:3360840/1‑50 (MQ=255)

                                    aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc          <  1:4660936/50‑1 (MQ=255)

                                    aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc          <  1:6441790/50‑1 (MQ=255)

                                    aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc          <  1:3364543/50‑1 (MQ=255)

                                    aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc          >  1:5632796/1‑50 (MQ=255)

                                    aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc          <  1:1925921/50‑1 (MQ=255)

                                     cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt         <  1:496666/50‑1 (MQ=255)

                                     cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt         <  1:682134/50‑1 (MQ=255)

                                     cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt         >  1:4308777/1‑50 (MQ=255)

                                     cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt         >  1:138158/1‑50 (MQ=255)

                                     cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt         <  1:6358179/50‑1 (MQ=255)

                                      tttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg        >  1:2170499/1‑50 (MQ=255)

                                       ttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg       >  1:6052565/1‑50 (MQ=255)

                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg       <  1:1365227/49‑1 (MQ=255)

                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg        <  1:6094411/48‑1 (MQ=255)

                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg        <  1:6621120/48‑1 (MQ=255)

                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc      >  1:6238289/1‑50 (MQ=255)

                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCt     <  1:1662622/49‑1 (MQ=255)

                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc    <  1:6157671/50‑1 (MQ=255)

                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc    <  1:1812339/50‑1 (MQ=255)

                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc    >  1:1645403/1‑50 (MQ=255)

                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc    <  1:472111/50‑1 (MQ=255)

                                           tGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCg   >  1:1017630/1‑50 (MQ=255)

                                            gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt  >  1:4907739/1‑50 (MQ=255)

CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT  >  NC_000913/3090235‑3090328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`