| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 57 [1] | [0] 57 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 1 (0.010) | 55 (0.840) | 39/96 | 0.1 | 99.1% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTC > 1:3836733/1‑50 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCT < 1:106098/49‑1 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCT < 1:2518878/49‑1 GGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTGACTCTAC > 1:2629361/1‑50 GGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTAC < 1:696465/50‑1 GTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACC < 1:1391538/50‑1 GTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATAACTCTACC > 1:3175099/1‑50 GCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAACAATCTACCcc > 1:649561/1‑48 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 1:306683/49‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 1:2959274/49‑1 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAA > 1:1172726/1‑50 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:2541072/50‑1 TGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCCCCATG > 1:889071/1‑50 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:707849/50‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 1:3475840/49‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:1148897/50‑1 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 1:2825864/50‑1 ATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATt > 1:1733360/1‑48 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAAT < 1:2184111/50‑1 GCACCTGTAAAGTGGCGGGGATAACTCTACCTCAATGTGTATCACAATAT < 1:1407866/50‑1 CACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATC < 1:4899844/50‑1 CACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATC < 1:3494514/50‑1 CACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATC < 1:2071118/50‑1 ACCTGTAAAGTGGCGGGGATCACTCTGCCTCAATGTGTATCACAATATCC < 1:3326733/50‑1 ACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCC < 1:226473/50‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:401558/50‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:1276708/50‑1 CTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCAT < 1:4499838/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATT < 1:3139567/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATT < 1:2071937/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 1:2755203/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 1:4774256/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 1:4657935/48‑1 TAAAGTGGCGGGGATCAATCTACCTCAATGTGTATCACAATATCCATATT < 1:2558500/50‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTC < 1:2381028/49‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT < 1:2856100/50‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT < 1:2927806/50‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT < 1:2311214/50‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG < 1:2476645/50‑1 GGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT > 1:847913/1‑50 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:4354192/49‑1 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:767119/1‑50 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:3865116/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:2389068/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATACATATTCTTTGTGGG < 1:569850/50‑1 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:497148/1‑50 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:3365752/1‑49 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:4777262/1‑49 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 1:531905/50‑1 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:2410882/1‑48 ATCACTCTACCTCAATATGTATCACAATATCCAGATTCTTTGTGGGGGAG < 1:426376/50‑1 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:674925/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:1320580/1‑50 CACTCTACCTCAATGTCTCTCTCATTATCCATATTCTTTGTGGGGGAGT < 1:688791/49‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 1:475064/50‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:1398298/1‑50 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |