| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 69 [0] | [0] 68 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 66 (1.030) | 47/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263463‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > NC_000913/325411‑325458 TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA > 1:562277/1‑50 TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT < 1:4739163/49‑1 TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT < 1:5025956/49‑1 TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAG > 1:901812/1‑50 TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAG > 1:4904537/1‑50 TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAG > 1:2716517/1‑50 TCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAG < 1:1807570/49‑1 CTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTC > 1:2143854/1‑50 ACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTG > 1:863413/1‑50 CAGAAAATTCACGGCATCGGCTAGGGTGATACAGGCATCGATAGTCTGTA < 1:3621082/50‑1 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT < 1:3848726/50‑1 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:4845241/1‑50 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT < 1:75291/50‑1 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCA < 1:1583609/50‑1 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCA < 1:1192735/50‑1 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCA < 1:3771068/50‑1 AAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG > 1:2034877/1‑50 AAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG < 1:410340/50‑1 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG > 1:3688417/1‑49 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG > 1:2046041/1‑49 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG > 1:3042220/1‑49 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATG > 1:3653472/1‑50 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT < 1:2015149/49‑1 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT < 1:4287938/49‑1 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT < 1:4954451/49‑1 ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGT < 1:2014218/50‑1 CGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTT > 1:1108520/1‑50 CGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTT < 1:595640/50‑1 CGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTT < 1:951758/50‑1 CGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTT < 1:2681482/50‑1 GGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC > 1:1655151/1‑50 GGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC < 1:4198800/50‑1 GCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCG < 1:4788283/50‑1 GCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCG < 1:368898/50‑1 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG < 1:4859454/50‑1 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG > 1:2150647/1‑50 CGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT > 1:4668582/1‑49 CGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT > 1:4985644/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA < 1:2013599/50‑1 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT > 1:572136/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT > 1:5138062/1‑49 GCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA > 1:4638842/1‑49 CTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:1515517/1‑50 CTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA < 1:2662849/50‑1 AGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA > 1:4657547/1‑50 AGGGAGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA > 1:2037360/1‑50 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT < 1:2009766/50‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT < 1:3729417/50‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAAT < 1:2707852/48‑1 GTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT > 1:2381550/1‑48 TGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG < 1:3482697/50‑1 ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCA < 1:218907/50‑1 ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC > 1:4991929/1‑49 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAA < 1:2872352/50‑1 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAA < 1:4302274/50‑1 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA < 1:1368765/49‑1 CGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAA < 1:193211/50‑1 GGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAG > 1:2300263/1‑50 GCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGC > 1:1041754/1‑50 CATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCC > 1:4466340/1‑50 CATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCC > 1:4408535/1‑50 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:4247438/1‑50 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC < 1:5058569/50‑1 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:1611552/1‑50 ATCGATAGTCTGCATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC < 1:1289592/50‑1 TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG > 1:4225197/1‑50 TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG < 1:2284472/50‑1 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCA < 1:366775/50‑1 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGC < 1:2770995/49‑1 TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:99496/1‑49 TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263463‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > NC_000913/325411‑325458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |