| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 114 [0] | [0] 113 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 113 (1.690) | 65/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
Only 100 of 113 total aligned reads displayed.
AATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/332318‑332365‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATC > NC_000913/377317‑377363 AATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGA < 1:4837297/50‑1 ATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGAT < 1:3386682/50‑1 TCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATA < 1:3776892/50‑1 TCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATA < 1:3397763/50‑1 TCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATA < 1:4060483/50‑1 CGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGAT > 1:2839031/1‑48 GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAG > 1:342082/1‑50 GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAG < 1:411112/50‑1 GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAA < 1:3927495/49‑1 GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAA < 1:2028867/49‑1 GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAA < 1:283267/49‑1 GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAA < 1:1221790/49‑1 ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGT < 1:1464433/50‑1 ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGT > 1:4073533/1‑50 ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGT > 1:3841576/1‑50 ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGT > 1:811771/1‑50 CAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTC < 1:3751497/50‑1 CAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTC < 1:1307772/50‑1 AGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCG < 1:4373323/50‑1 GGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGT < 1:4681248/50‑1 GGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGT > 1:2388018/1‑50 TAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGC < 1:4102338/50‑1 TAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGC < 1:3469997/50‑1 TAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGC < 1:610178/50‑1 TAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGC < 1:625489/50‑1 ATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGC < 1:2184716/50‑1 ATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG > 1:3061073/1‑49 TCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG > 1:3015963/1‑48 TCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG > 1:4445913/1‑48 TCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG > 1:2534394/1‑48 CACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG > 1:3676250/1‑47 CACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG > 1:605337/1‑47 CACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG > 1:3442573/1‑47 ACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG > 1:2657006/1‑46 ACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG > 1:655409/1‑46 CTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGAT < 1:2654118/50‑1 CTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGAT > 1:1787791/1‑50 CTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGAT > 1:3897986/1‑50 TCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATG > 1:4751810/1‑50 TCATACTGAACAGCGATAAAAGATAAAGGCGGATAAGTCGTGCGCAGATG > 1:2525288/1‑50 CATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC > 1:4437498/1‑50 ATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCC < 1:1267176/50‑1 ATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCC > 1:172894/1‑50 ATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCC > 1:136601/1‑50 ATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC < 1:1391841/49‑1 ACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCT > 1:3070966/1‑49 ACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCT > 1:4758110/1‑49 CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGA < 1:1536329/50‑1 CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGA < 1:373851/50‑1 CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTG < 1:5091676/49‑1 TGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT > 1:3600895/1‑50 GAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATG > 1:4405276/1‑50 GAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATG > 1:2297005/1‑50 AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC < 1:1319018/50‑1 AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC < 1:1179523/50‑1 AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT < 1:4560512/48‑1 AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT < 1:900590/48‑1 AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT < 1:2988484/48‑1 ACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC > 1:3110582/1‑49 AGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGAC < 1:1136226/50‑1 AGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGAC > 1:800987/1‑50 CGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC < 1:3821729/50‑1 CGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC > 1:4146845/1‑50 CGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC < 1:3251183/50‑1 GATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCT < 1:3727412/50‑1 GATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCT < 1:55846/50‑1 GATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC > 1:2325603/1‑49 ATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTA < 1:1198125/50‑1 ATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTA < 1:2161247/50‑1 TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAT < 1:4868966/50‑1 TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAT > 1:2042800/1‑50 TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAT < 1:2126228/50‑1 AAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATG > 1:1904354/1‑50 AAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATG > 1:4832006/1‑50 AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGC > 1:152983/1‑50 AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATG < 1:4148218/49‑1 AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATG < 1:837753/49‑1 AAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCG < 1:4983976/50‑1 AAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCG > 1:2451771/1‑50 AGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGC < 1:1552477/50‑1 GATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCG > 1:5080364/1‑50 GATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCG < 1:468261/50‑1 GATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCG > 1:469404/1‑50 GATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCG < 1:4456731/50‑1 ATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGT > 1:2143177/1‑50 ATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGT > 1:881036/1‑50 ATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGT < 1:872863/50‑1 ATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGT < 1:1639121/50‑1 TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTC < 1:1286211/50‑1 TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTC < 1:1071662/50‑1 TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTC < 1:4184346/50‑1 TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTC < 1:4269060/50‑1 AAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCT > 1:3131920/1‑50 AAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTT < 1:1568849/50‑1 AAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCT > 1:407412/1‑49 AAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCT < 1:355562/49‑1 GGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAT > 1:3311232/1‑50 GGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAT < 1:1619314/50‑1 GTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATC < 1:735815/50‑1 TGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAT > 1:3207680/1‑48 AATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/332318‑332365‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATC > NC_000913/377317‑377363 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |