| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 69 [0] | [0] 66 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 65 (0.990) | 45/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040453‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGA > NC_000913/1114265‑1114311 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTC < 1:4643169/50‑1TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:4388725/1‑49TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:3195520/1‑49TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:1358008/49‑1 TTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:2437451/1‑48 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT > 1:3307054/1‑50 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT > 1:958646/1‑50 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT > 1:152782/1‑50 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT > 1:5064013/1‑50 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT > 1:4045148/1‑50 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT < 1:3906579/49‑1 CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT < 1:3864402/49‑1 TTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC > 1:1444959/1‑50 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:1585165/1‑50 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCG < 1:82789/49‑1 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:2068607/48‑1 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:4410817/48‑1 TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:1081880/48‑1 GGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:2396303/1‑49 GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA > 1:5082707/1‑50 TTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC > 1:772414/1‑50 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG < 1:3923656/50‑1 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG > 1:5070384/1‑50 GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT < 1:2076993/49‑1 CGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG > 1:1092250/1‑50 CGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG > 1:946258/1‑50 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG < 1:3242206/50‑1 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGT < 1:635112/50‑1 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGT < 1:4995138/50‑1 CATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA > 1:471531/1‑50 CATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA > 1:233584/1‑50 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT > 1:3806711/1‑50 TTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC > 1:731658/1‑50 TTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC > 1:1860084/1‑50 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC > 1:197299/1‑49 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC < 1:1241143/49‑1 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA > 1:4360349/1‑50 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCG < 1:2025563/49‑1 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC > 1:1592021/1‑50 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACG < 1:663930/50‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACG < 1:2470547/50‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC < 1:4205681/49‑1 GTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC > 1:4841262/1‑50 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:902738/1‑50 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC < 1:2114024/49‑1 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTA < 1:4316719/50‑1 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTA < 1:2956825/50‑1 TCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:977243/1‑47 TCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:4317175/1‑47 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA > 1:2194802/1‑50 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAG < 1:3407430/49‑1 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAG < 1:529440/49‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC < 1:4282076/50‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC > 1:433696/1‑50 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC > 1:1461495/1‑50 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC > 1:3058303/1‑50 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC < 1:2023840/50‑1 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACT < 1:757362/50‑1 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG > 1:3686734/1‑50 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG > 1:3682919/1‑50 CTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGT > 1:1118181/1‑50 TCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTT > 1:1450026/1‑50 TCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTG < 1:2568783/48‑1 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC > 1:1931323/1‑49 CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGT < 1:3581424/47‑1 ACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCA > 1:5009233/1‑50 CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGA < 1:727134/50‑1 CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGA < 1:1805497/50‑1 CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG > 1:2676264/1‑49 TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040453‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGA > NC_000913/1114265‑1114311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |