| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 47 [0] | [0] 48 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 47 (0.700) | 32/98 | 0.4 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997066‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > NC_000913/2023679‑2023726 TGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTTCC > 1:5010293/1‑50 GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCC < 1:3593296/49‑1 CAGCAGAAACTTCCCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCG < 1:4598811/49‑1 AGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTA < 1:1442347/50‑1 AGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTA < 1:2401393/50‑1 GCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAA < 1:901207/50‑1 GCAGAAACTTCTCGAGGAACTGGCGGGCGCGAGGCTGCTCGGCTCCGTAA > 1:815298/1‑50 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACG > 1:4235142/1‑50 AACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTT < 1:102266/50‑1 CTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTAT < 1:1677914/50‑1 CTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTAT < 1:1375615/50‑1 TCTCGAGGAACTGGCGGGTGCGAGGGTGCTCCGTTTCGTAACGTTTATCA > 1:2951197/1‑50 CTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCA < 1:3837613/49‑1 CGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCGTAACGTTTATCATGT > 1:48812/1‑50 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTT < 1:3465759/50‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATG < 1:278575/48‑1 GGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTAT < 1:1724523/50‑1 GGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTAT < 1:4808802/50‑1 GGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTAT < 1:3981592/50‑1 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC < 1:2815690/50‑1 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC < 1:384416/50‑1 CTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTA < 1:2682468/50‑1 CGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGA < 1:1823805/50‑1 CGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGA < 1:367807/50‑1 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT < 1:2341597/50‑1 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT < 1:672374/50‑1 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT < 1:3181496/50‑1 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT < 1:142287/50‑1 GTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTA < 1:3784532/50‑1 GTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTA < 1:2880353/50‑1 TGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTAT < 1:4046615/50‑1 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC < 1:1687204/50‑1 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATC < 1:3226163/49‑1 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATC < 1:485096/49‑1 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:876351/1‑49 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:555685/1‑49 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:254868/1‑49 TGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA > 1:4017936/1‑50 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATA < 1:1007267/50‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT < 1:4935988/49‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA < 1:1651991/48‑1 CGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA > 1:1136145/1‑49 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA < 1:1468714/50‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > 1:3358876/1‑50 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT < 1:4847706/49‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT < 1:1580833/49‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT < 1:1474622/49‑1 TGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997066‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > NC_000913/2023679‑2023726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |