| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 66 [0] | [0] 65 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 64 (0.960) | 45/98 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
ACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2466498‑2466544‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA > NC_000913/2476179‑2476226 ACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAG < 1:4593289/50‑1ACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTA < 1:3774606/49‑1 CGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGA < 1:4526436/50‑1 TAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA > 1:543227/1‑50 TAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA < 1:3670104/50‑1 TAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA > 1:4137545/1‑50 TAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA > 1:4468650/1‑50 TAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAACCTAGAGCCA > 1:2357735/1‑50 AAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA < 1:3879748/50‑1 AAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA > 1:4079943/1‑50 AAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATAC < 1:3885115/50‑1 AAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA > 1:1477284/1‑49 AAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA > 1:4335318/1‑49 AAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA > 1:2915083/1‑49 AAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACA < 1:2163063/50‑1 AAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACA < 1:3231487/50‑1 AAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA > 1:1357434/1‑48 AGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAG < 1:2135904/50‑1 AGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAG < 1:393741/50‑1 AGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAG < 1:4494807/50‑1 GTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGC < 1:3321483/50‑1 TGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCC < 1:2456382/50‑1 TGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCC < 1:2754931/50‑1 GGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCT > 1:928508/1‑50 GGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCT > 1:1266495/1‑50 GATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTC < 1:1424421/50‑1 GATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCT > 1:3825674/1‑49 ATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCA > 1:4179069/1‑50 ATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCA > 1:4953054/1‑50 TAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCAC < 1:5013950/50‑1 AAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACA > 1:4351152/1‑50 AAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACAC > 1:1560147/1‑50 AAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACAC > 1:3166716/1‑50 ATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTC > 1:3754375/1‑50 TAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTC > 1:3256013/1‑49 ATTTTACCCACCGGATTTTTACCCTAGAGCTATACAGCCTCACACTCGAT < 1:5040480/50‑1 ATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT < 1:1247784/50‑1 TTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT > 1:4981461/1‑48 TTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT > 1:3896275/1‑48 TTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT > 1:1862334/1‑48 TTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAG > 1:4883472/1‑50 TACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGG > 1:5023970/1‑50 ACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCGCACTCGATGAGG < 1:3191966/49‑1 ACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGC > 1:1550070/1‑50 CCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCC > 1:1352500/1‑50 ACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGT < 1:2852026/50‑1 CCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTC < 1:2555505/50‑1 GGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAG > 1:4955982/1‑50 GGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAG > 1:4781849/1‑50 GGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAG < 1:4368335/50‑1 GGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAG > 1:3238289/1‑50 GATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGT > 1:370249/1‑50 ATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTT > 1:983509/1‑50 TTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTT > 1:4544687/1‑50 TTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTT < 1:1103234/50‑1 TTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCT > 1:4603852/1‑50 ACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA > 1:879357/1‑49 ACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA > 1:3536262/1‑49 ACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA < 1:3703237/49‑1 CCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAA > 1:461024/1‑49 CCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAA < 1:2451285/49‑1 CCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA > 1:1807698/1‑50 CCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA > 1:17662/1‑50 CTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA > 1:2358941/1‑49 ACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2466498‑2466544‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA > NC_000913/2476179‑2476226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |