| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 73 [0] | [0] 71 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 71 (1.060) | 47/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362113‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 1:3287884/50‑1TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 1:3893146/50‑1TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 1:1157453/50‑1 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:3402266/1‑49 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA < 1:2509209/50‑1 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:246547/1‑50 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:4941136/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:452941/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:4757084/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:4508912/48‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:290227/48‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:4618572/48‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT > 1:4671419/1‑50 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:2917253/50‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT > 1:554143/1‑50 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:112353/1‑50 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:517386/1‑50 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC < 1:4534416/50‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC < 1:701622/50‑1 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:1978143/50‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:2915011/1‑49 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:1673567/1‑49 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:570216/1‑50 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG < 1:3365128/50‑1 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG < 1:928038/50‑1 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG < 1:551535/50‑1 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:1445053/1‑49 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:2427788/50‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:2166565/50‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:3189253/50‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA < 1:3649578/50‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA < 1:4394350/50‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:1088649/1‑50 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:2108387/1‑50 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:2827306/1‑50 GTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA > 1:1672022/1‑50 GTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA > 1:2240000/1‑50 GTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA > 1:505954/1‑50 GTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA > 1:2946147/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA < 1:3295053/49‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA < 1:1729188/49‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:1710252/48‑1 TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAATATCAG > 1:1184745/1‑50 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:4850430/1‑50 AACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT > 1:556966/1‑50 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT < 1:2880644/49‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:4589520/1‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:2183300/1‑50 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG < 1:890770/50‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT > 1:1180729/1‑50 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 1:2480509/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT > 1:801818/1‑50 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:2517536/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:4820690/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:1790574/50‑1 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT < 1:3123258/50‑1 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:4573392/1‑50 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:1587339/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:3864414/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA < 1:1489851/49‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:3422577/1‑49 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:3683652/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:4613874/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:3683510/50‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACG < 1:908263/49‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:2060590/50‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > 1:1044760/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG < 1:4891725/50‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > 1:3589410/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > 1:3077654/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:4181186/49‑1 TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362113‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |