Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,453,928 Δ15,926 bp gspA–[chiA] 16 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3453928 3469853 15926 67 [0] [0] 67 gspA–[chiA] gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 34539270 (0.000)64 (1.020) 46/92 0.0 100% coding (1/420 nt) gspB putative general secretion pathway protein B
?NC_000913 3469854 = 0 (0.000)intergenic (‑1/+291) chiA/tufA endochitinase/translation elongation factor Tu 1

AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3453877‑3453927
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG  >  NC_000913/3469854‑3469901
                                                                                                   
AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA                                                   >  1:84898/1‑50
 GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT                                                  >  1:833644/1‑50
  GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATT                                                 <  1:2421297/50‑1
   GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA                                                >  1:2624461/1‑50
    TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT                                               <  1:4050935/50‑1
     GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT                                               >  1:2104913/1‑49
     GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT                                               >  1:3225782/1‑49
      ACCTGTTTCTTACTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA                                             <  1:2965481/50‑1
          GTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC                                         >  1:1099286/1‑50
              CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG                                      <  1:926759/49‑1
               TTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT                                     >  1:1944700/1‑49
               TTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT                                     >  1:852237/1‑49
                 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC                                  >  1:783449/1‑50
                 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG                                    <  1:3569730/48‑1
                 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG                                    <  1:3413877/48‑1
                 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG                                    <  1:2300058/48‑1
                 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT                                     <  1:5084355/47‑1
                  CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG                                 >  1:3002315/1‑50
                  CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC                                  <  1:4565098/49‑1
                    GCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT                                >  1:2141409/1‑49
                     CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA                               >  1:3074972/1‑49
                     CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT                                <  1:3366396/48‑1
                        ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA                           <  1:143381/50‑1
                        ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA                           >  1:473013/1‑50
                        ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA                           <  1:2875463/50‑1
                        ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA                           >  1:4242883/1‑50
                        ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAA                            <  1:2345206/49‑1
                        ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAA                            <  1:1869984/49‑1
                          GCGCGGCGATATAGAATTCCAACATTATAATCCCTTGTGACGTAAAAACT                         <  1:3357126/50‑1
                            GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG                        >  1:4057407/1‑49
                              GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA                      >  1:4733043/1‑49
                              GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA                      >  1:3434493/1‑49
                               GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA                     >  1:2309995/1‑49
                                CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                   <  1:2738124/50‑1
                                CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                   >  1:4783766/1‑50
                                 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC                  <  1:1904704/50‑1
                                 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                   >  1:2899673/1‑49
                                   TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA                <  1:4986634/50‑1
                                   TATAAAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA                <  1:4472960/50‑1
                                    ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA                >  1:5088280/1‑49
                                     TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAACACAA                >  1:1988929/1‑48
                                     TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA              <  1:1777088/50‑1
                                     TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAA               <  1:4381161/49‑1
                                     TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAA               <  1:4660622/49‑1
                                      AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG             >  1:190823/1‑50
                                       GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT            >  1:1449452/1‑50
                                       GAAATCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT            <  1:5134208/50‑1
                                        AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC           <  1:2701145/50‑1
                                        AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC           >  1:2799726/1‑50
                                         ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC          >  1:4927899/1‑50
                                         ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC          <  1:1228707/50‑1
                                         ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC          <  1:564462/50‑1
                                          TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT         <  1:715306/50‑1
                                          TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC          >  1:425820/1‑49
                                          TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC          >  1:476910/1‑49
                                          TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC          >  1:1379195/1‑49
                                            CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC       >  1:4455171/1‑50
                                            CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA        <  1:835072/49‑1
                                            CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA        <  1:78124/49‑1
                                             AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG      >  1:4077996/1‑50
                                             AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG      >  1:2401467/1‑50
                                             AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC       <  1:1127497/49‑1
                                             AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC       <  1:1679634/49‑1
                                             AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC       <  1:3724197/49‑1
                                              AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG      >  1:3175081/1‑49
                                              AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG      >  1:3541705/1‑49
                                                 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG   >  1:1635923/1‑49
                                                  TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG  >  1:1983222/1‑49
                                                                                                   
AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3453877‑3453927
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG  >  NC_000913/3469854‑3469901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.