| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,593,299 | Δ10 bp | coding (130‑139/714 nt) | livF ← | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3593298 | 8 (0.120) | 55 (0.820) | 43/98 | 0.0 | 87.3% | coding (140/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| ? | NC_000913 | 3593309 = | 8 (0.120) | coding (129/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF | |||||
CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3593251‑3593298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGA > NC_000913/3593309‑3593355 CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACC > 1:3216477/1‑50CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACC < 1:424064/50‑1CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACC < 1:4483346/50‑1 AATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCC > 1:4596352/1‑50 ATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCC < 1:3711737/50‑1 ATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCC < 1:601477/50‑1 CGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGC < 1:3271771/49‑1 CCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCC < 1:4680879/50‑1 CCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCC > 1:1661225/1‑50 CCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCC < 1:990017/50‑1 CCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCG > 1:5005390/1‑50 CGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGT > 1:3697792/1‑50 GCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTT > 1:2109154/1‑50 GCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTT < 1:255416/50‑1 GCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTT < 1:4285833/50‑1 CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC > 1:1805809/1‑50 TGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCG > 1:666873/1‑50 TGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCG > 1:704217/1‑50 TGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCG > 1:938932/1‑50 GGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGC > 1:1257814/1‑50 GTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCG > 1:4944267/1‑50 GCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCC > 1:1182433/1‑49 GCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCC < 1:4367204/49‑1 ACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAAT > 1:4190533/1‑50 CGCGGATCGCCGCATAACGTGCCGAGCACCCCCCCCCGTTCGCGCCAAT > 1:4967101/1‑49 CGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAG < 1:2053149/50‑1 CGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAG > 1:4989078/1‑50 GATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCG > 1:4699564/1‑50 GATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCG < 1:2787353/50‑1 ATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGT > 1:2820972/1‑50 ATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGT > 1:412815/1‑50 TCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTG < 1:2728881/50‑1 TCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTG < 1:4225974/50‑1 CGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGA > 1:2460224/1‑50 GCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGAC < 1:4130273/50‑1 GCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGA > 1:117619/1‑49 CCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACA < 1:3029780/50‑1 CCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGAC > 1:3834392/1‑49 CGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAA > 1:4632901/1‑50 GCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAAT > 1:1770230/1‑50 GCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAAT < 1:2281462/50‑1 GCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAAT > 1:4680646/1‑50 CATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATC < 1:3603329/50‑1 CATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATC < 1:1184806/50‑1 TAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTC < 1:909152/50‑1 AACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCG > 1:1416094/1‑50 ACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCG < 1:4629724/49‑1 ACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCG < 1:15488/49‑1 CGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCC < 1:3028855/50‑1 TGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCT > 1:1694639/1‑50 GAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATT > 1:2447988/1‑50 AGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTG < 1:1328349/50‑1 AGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATT > 1:331699/1‑49 CACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGA > 1:298243/1‑49 CACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGA > 1:3667588/1‑49 CAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3593251‑3593298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGA > NC_000913/3593309‑3593355 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |