| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 57 [0] | [0] 57 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 54 (0.830) | 41/96 | 0.0 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618942‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG > NC_000913/3625680‑3625727 CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT < 1:2079031/50‑1 GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTT < 1:2183281/50‑1 CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTA > 1:3401585/1‑50 GCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACG > 1:1601693/1‑50 TGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA < 1:2179628/50‑1 GCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCAT > 1:3685652/1‑50 CGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATT > 1:1277878/1‑50 CGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATT > 1:1605669/1‑50 GGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG < 1:4204098/50‑1 GCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGT < 1:868738/50‑1 GCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGT < 1:256957/50‑1 GCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGT > 1:2283760/1‑50 CACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTC < 1:4376571/50‑1 CGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC > 1:4758409/1‑49 CGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC > 1:4364979/1‑49 GGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCA < 1:875103/50‑1 GGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCA < 1:4684289/50‑1 GCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT < 1:2015313/50‑1 aATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC < 1:2716431/49‑1 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC < 1:3680838/50‑1 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC < 1:3989823/50‑1 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC < 1:2859874/50‑1 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC > 1:2547913/1‑50 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCG > 1:2307645/1‑50 GCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTT > 1:3387705/1‑50 GCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCT < 1:2052029/49‑1 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTC < 1:1838240/50‑1 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCC > 1:4670372/1‑50 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCC < 1:5073782/50‑1 TGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTG < 1:2976387/50‑1 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA > 1:4633231/1‑50 TTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT > 1:1160629/1‑50 TTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT > 1:1850787/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATC < 1:4655246/49‑1 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT < 1:332857/48‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG < 1:1073852/49‑1 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCA < 1:3431198/50‑1 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCA < 1:4730064/50‑1 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCA < 1:2947063/50‑1 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:1134826/1‑48 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:1032676/1‑50 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG < 1:1228089/50‑1 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:5138283/1‑50 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCA < 1:992397/50‑1 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:2398201/1‑48 GGAAGATTGTGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAG > 1:1378391/1‑50 AAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG < 1:1220757/50‑1 AAGATTGAGTTACGCCATTGTCCCAATCGTCTACCTGAATCGCAGCAGCG < 1:643082/50‑1 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 1:4802089/1‑49 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAT < 1:1107151/50‑1 TGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATG > 1:2514555/1‑50 GAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGG > 1:550625/1‑50 GAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGG > 1:557417/1‑50 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > 1:1236784/1‑50 GTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG < 1:243911/50‑1 TTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG > 1:1194007/1‑49 TTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG > 1:3496481/1‑49 CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618942‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG > NC_000913/3625680‑3625727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |