| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 66 [0] | [0] 67 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 63 (0.960) | 46/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3761944‑3761992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGC > NC_000913/3770243‑3770291 GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCT > 1:4088189/1‑50 ACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTC < 1:1988376/50‑1 CGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCA < 1:5054027/50‑1 GAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAA > 1:4284715/1‑50 AGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAAT < 1:1189968/50‑1 GTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATG < 1:4875622/50‑1 GTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATG < 1:1436957/50‑1 GTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATG < 1:3646127/50‑1 GTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATG < 1:2959934/50‑1 GTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAAT > 1:3264493/1‑49 TTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGA > 1:3402593/1‑50 ATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCA < 1:701121/50‑1 ATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCA < 1:2311678/50‑1 ATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCC > 1:3052304/1‑49 TGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAA < 1:3345167/50‑1 GCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAA > 1:435561/1‑50 GCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAA > 1:1571705/1‑50 CCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAA > 1:4110503/1‑49 CGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATA < 1:4767828/50‑1 CGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAAT > 1:1732584/1‑49 CGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAAT > 1:2927135/1‑49 CGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAAT > 1:2864614/1‑49 GAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAA < 1:3790256/50‑1 GAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATA > 1:579980/1‑49 AGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAA < 1:770333/50‑1 TCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGA < 1:4831746/50‑1 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATA < 1:2177081/50‑1 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGAT < 1:3598240/49‑1 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGAT > 1:1264525/1‑49 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGAT > 1:1934323/1‑49 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAA < 1:4407109/48‑1 GTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATG > 1:3271027/1‑49 GTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATG < 1:5064615/49‑1 GTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATG < 1:2274670/49‑1 TGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGC < 1:1476432/49‑1 GCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCAT > 1:1880736/1‑50 AGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATC > 1:3048535/1‑48 AGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATC > 1:4213867/1‑48 GGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAG < 1:4731226/50‑1 GAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGC < 1:1000396/50‑1 GAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGC > 1:3702333/1‑50 AAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTG > 1:1899326/1‑50 AAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTG < 1:2642858/50‑1 AAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTG > 1:637872/1‑50 ATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTC < 1:2564142/50‑1 ATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGT > 1:2457928/1‑49 ATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGT > 1:5063478/1‑49 ATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGT > 1:26478/1‑49 TATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCA < 1:3915182/50‑1 TATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCA > 1:4378685/1‑50 TATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCA > 1:3444003/1‑50 ATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAT > 1:2085589/1‑50 TCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATT < 1:2754792/50‑1 TCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATT > 1:2492696/1‑50 TCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAT < 1:261037/49‑1 AGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCT < 1:4028767/50‑1 AGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTC < 1:826770/49‑1 AGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTC < 1:663868/49‑1 TGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGC < 1:1420996/50‑1 TGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGC < 1:1378625/50‑1 TGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAG < 1:3975896/49‑1 TGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAG > 1:1779906/1‑49 TGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAG > 1:822770/1‑49 CTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGC < 1:4260682/50‑1 CTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > 1:696746/1‑49 CTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > 1:1757782/1‑49 GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3761944‑3761992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGC > NC_000913/3770243‑3770291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |