| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 71 [0] | [0] 69 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 67 (1.000) | 48/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299580‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325166‑4325214 ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGA > 1:4133416/1‑50ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGA > 1:2707334/1‑50 ctGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT > 1:1053463/3‑50 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT < 1:3705836/50‑1 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT < 1:2094936/50‑1 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:4706820/1‑50 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:3775436/1‑50 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:2121732/1‑50 GACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCA < 1:1468492/50‑1 GACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:3463895/1‑48 GACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:168333/1‑48 ACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAG < 1:1418330/50‑1 CTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCC > 1:4807157/1‑50 CTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCC > 1:595046/1‑50 TGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT > 1:4682968/1‑50 GCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTC > 1:1366832/1‑50 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCC < 1:4954570/50‑1 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT < 1:1611117/48‑1 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT < 1:1351289/48‑1 TGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC > 1:4016906/1‑49 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTA < 1:1095024/49‑1 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTA < 1:701591/49‑1 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTA < 1:5051375/49‑1 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCT < 1:4611722/48‑1 TACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAA < 1:1609297/50‑1 ACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAA > 1:4581737/1‑49 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAA < 1:4298275/50‑1 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA < 1:3768909/49‑1 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA < 1:3922495/49‑1 CCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA > 1:3890833/1‑48 CGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAG < 1:131779/50‑1 GCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGT < 1:2842542/50‑1 CCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTG < 1:1284711/50‑1 CCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTG > 1:3834144/1‑50 CGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGG < 1:1316474/50‑1 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC > 1:632550/1‑50 CCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT < 1:2108470/50‑1 CCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT < 1:4735775/50‑1 CCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT < 1:4413639/50‑1 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC > 1:4432098/1‑50 CAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCC < 1:633642/50‑1 GCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 1:1286433/50‑1 GCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT > 1:4558933/1‑50 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC < 1:4227223/50‑1 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC < 1:2294908/50‑1 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:3576584/1‑50 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG < 1:309464/50‑1 GATTTCATCAACTGAATGGATGCAGACTCCCTAAAAAAGTGGCTCCATCG > 1:4950816/1‑50 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG < 1:716533/50‑1 TCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGC > 1:4689615/1‑50 CATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG > 1:4762869/1‑50 CATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGC < 1:3853215/49‑1 CATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGC < 1:1565186/49‑1 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG > 1:1200511/1‑49 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGAT > 1:802949/1‑49 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGAT > 1:3756587/1‑49 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGAT < 1:2848246/49‑1 ACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTA < 1:3800962/50‑1 TGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATT > 1:3808285/1‑50 GAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG > 1:4113694/1‑50 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT < 1:2789232/50‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT < 1:1181162/50‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG < 1:4464268/49‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATT < 1:1392032/48‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATT < 1:1379220/48‑1 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTG < 1:4096410/50‑1 GGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > 1:4380258/1‑50 ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299580‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325166‑4325214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |