| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 69 [0] | [0] 70 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 64 (0.980) | 49/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496628‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA > NC_000913/4549712‑4549760 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGA < 1:92735/50‑1TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG > 1:59820/1‑49 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAA < 1:2879939/50‑1 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAA > 1:1846150/1‑50 TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT < 1:3142832/50‑1 ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 1:1269174/1‑49 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATC < 1:2939597/49‑1 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCAC < 1:4331253/49‑1 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA < 1:3420911/50‑1 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:3179235/1‑49 TTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA < 1:3011660/50‑1 GATAATGCTTGTACCAACAGGGAGGGAATGCGAGAAATCACAGGACATT < 1:1647834/49‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG > 1:1470351/1‑50 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG < 1:3998818/50‑1 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC < 1:1791857/50‑1 ATAATGCTTGTACCAACAAGGAGGGAATACGAGAAATCACAGGACATTGC < 1:4989952/50‑1 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT < 1:47023/50‑1 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:3330438/1‑49 AATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT > 1:3189354/1‑49 AATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT > 1:984527/1‑49 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA < 1:5087390/50‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTA < 1:3082602/49‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTA < 1:3026771/49‑1 GCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG > 1:1059478/1‑50 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG < 1:3605322/49‑1 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG < 1:4446950/49‑1 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG < 1:2930373/49‑1 TTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT > 1:1613098/1‑50 TTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT > 1:2607961/1‑50 TTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT > 1:1721793/1‑50 TGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG > 1:1145864/1‑50 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG < 1:3905642/49‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT < 1:4311276/48‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT < 1:3408598/48‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG < 1:1323045/49‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG < 1:2060874/49‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG < 1:3527591/49‑1 ACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA > 1:3145155/1‑50 ACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA > 1:4375985/1‑50 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC < 1:2349788/50‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC > 1:3860015/1‑50 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC < 1:4782359/50‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA < 1:3066033/49‑1 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:181683/1‑50 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:2221955/1‑49 ACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGC > 1:4431696/1‑49 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA < 1:3385333/50‑1 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:1320231/1‑50 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:754567/1‑49 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:5136135/1‑49 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 1:4514080/50‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA > 1:2773332/1‑50 GGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT > 1:1301376/1‑50 GGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT < 1:1597738/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:979779/50‑1 GGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACC > 1:2480886/1‑50 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT < 1:2522454/50‑1 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:911736/1‑50 ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG > 1:1805506/1‑49 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:1545819/50‑1 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG > 1:581672/1‑48 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:2642213/1‑50 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:4980504/1‑50 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:2955248/1‑50 AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA < 1:126260/50‑1 AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA < 1:1639434/50‑1 AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA < 1:2729341/50‑1 AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA < 1:3017743/50‑1 AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT > 1:4023595/1‑49 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496628‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA > NC_000913/4549712‑4549760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |