| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 69 [0] | [0] 71 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1388888 | 0 (0.000) | 67 (1.020) | 51/96 | 0.0 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTTGCGCTTAATCCGCAGACCACCGCGACAACAAGGAGTAAAGATGAGAA > NC_000913/1388840‑1388936 | aCGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:4499180‑M1/1‑49 (MQ=255)aCGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT < 1:3420007‑M1/49‑1 (MQ=255) cGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:3107348‑M1/1‑48 (MQ=255) cGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:2960499‑M1/1‑48 (MQ=255) gTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTaca < 1:4644588‑M1/50‑4 (MQ=255) gTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTaca < 1:2311948‑M1/50‑4 (MQ=255) gTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:1103634‑M1/1‑47 (MQ=255) gTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:2128196‑M1/1‑47 (MQ=255) gTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:1625352‑M1/1‑47 (MQ=255) tCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacag > 1:566450‑M1/1‑46 (MQ=255) cacaCCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagg > 1:1424485‑M1/1‑45 (MQ=255) acacCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacaggg < 1:5013538‑M1/50‑7 (MQ=255) acacCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacaggg > 1:2364892‑M1/1‑44 (MQ=255) acacCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagg < 1:2345026‑M1/49‑6 (MQ=255) acCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtc < 1:3867263‑M1/50‑9 (MQ=255) ccTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtct < 1:4507813‑M1/50‑10 (MQ=255) aGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctcct > 1:69066‑M1/1‑38 (MQ=255) gTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctcctt < 1:4880702‑M1/50‑14 (MQ=255) gTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctcct > 1:2018804‑M1/1‑37 (MQ=255) tttATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctcctta > 1:918514‑M1/1‑36 (MQ=255) tATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttac < 1:2499772‑M1/49‑16 (MQ=255) aTGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttaca < 1:1251774‑M1/49‑17 (MQ=255) tGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaac < 1:234502‑M1/50‑19 (MQ=255) tGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaa > 1:449105‑M1/1‑32 (MQ=255) gCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaac > 1:3114786‑M1/1‑31 (MQ=255) gCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaac > 1:319638‑M1/1‑31 (MQ=255) cTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaa > 1:2573892‑M1/1‑30 (MQ=255) tAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaac > 1:1732860‑M1/1‑29 (MQ=255) tAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaac > 1:311618‑M1/1‑29 (MQ=255) aaCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaact > 1:4696496‑M1/1‑28 (MQ=255) aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaact < 1:2866204‑M1/49‑23 (MQ=255) aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaac < 1:3313397‑M1/48‑22 (MQ=255) cTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaactgt < 1:1080731‑M1/50‑25 (MQ=255) tCAATAACACAGCAAACGCTATTacagggtctccttacaacaactgtc < 1:4637396‑M1/48‑26 (MQ=255) cAATAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaac > 1:3814967‑M1/1‑22 (MQ=255) aaTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacg > 1:4622667‑M1/1‑21 (MQ=255) aaTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaac < 1:1681440‑M1/49‑29 (MQ=255) aTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacgc < 1:4189419‑M1/50‑31 (MQ=255) aTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacg > 1:3078998‑M1/1‑20 (MQ=255) tAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacgca < 1:3873880‑M1/50‑32 (MQ=255) aaCACAGCAAACGCTATTacagggtctccttacaacaactgtcaacgcag > 1:4484704‑M1/1‑18 (MQ=255) cacaGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagtt > 1:3770895‑M1/1‑16 (MQ=255) cacaGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagtt < 1:2109586‑M1/50‑35 (MQ=255) cacaGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagtt > 1:96832‑M1/1‑16 (MQ=255) acaGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagttt < 1:4664385‑M1/50‑36 (MQ=255) caGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttg < 1:3175923‑M1/50‑37 (MQ=255) gCAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttgta < 1:4934911‑M1/50‑39 (MQ=255) cAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaa < 1:369737‑M1/50‑40 (MQ=255) cAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaa < 1:3377788‑M1/50‑40 (MQ=255) aaaCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaat > 1:3082427‑M1/1‑10 (MQ=255) aaaCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaat > 1:4823310‑M1/1‑10 (MQ=255) aaCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaatt < 1:4083652‑M1/50‑42 (MQ=255) aCGCTATTgcagggtctccttacagcaactgtcaacgcagtttgtaatta < 1:4435410‑M1/50‑43 (MQ=255) aCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaatt > 1:4140750‑M1/1‑8 (MQ=255) gCTATTacagggtctccttacaacaactgtcaacgcagtttgtaattaa > 1:4268592‑M1/1‑6 (MQ=255) gCTATTacagggtctccttacaacaactgtcaacgcagtttgtaattaa > 1:5093291‑M1/1‑6 (MQ=255) gCTATTacagggtctccttacaacaactgtcaacgcagtttgtaatta > 1:97381‑M1/1‑6 (MQ=255) tATTacagggtctccttacaacaactgtcaacgcagtttgtaattaa > 1:4630289‑M1/1‑4 (MQ=255) tATTacagggtctccttacaacaactgtcaacgcagtttgtaattaa > 1:4005606‑M1/1‑4 (MQ=255) aTTacagggtctccttacaacaactgtcaacgcagtttgtaattaa > 1:3940959‑M1/1‑3 (MQ=255) aTTacagggtctccttacaacaactgtcaacgcagtttgtaattaa > 1:5123131‑M1/1‑3 (MQ=255) aTTacagggtctccttacaacaactgtcaacgcagtttgtaattaa > 1:260693‑M1/1‑3 (MQ=255) ttacagggtctccttacaacaactgtcaacgcagtttgtaattaaaagat > 1:892049‑M1/1‑2 (MQ=255) ttacagggtctccttacaacaactgtcaacgcagtttgtaattaaaagat < 1:1952295‑M1/50‑49 (MQ=255) ttacagggtctccttacaacaactgtcaacgcagtttgtaattaaaagat > 1:2071265‑M1/1‑2 (MQ=255) ttacagggtctccttacaacaactgtcaacgcagtttgtaattaaaaga < 1:2716459‑M1/49‑48 (MQ=255) ttacagggtctccttacaacaactgtcaacgcagtttgtaattaaaag < 1:291136‑M1/48‑47 (MQ=255) ttacagggtctccttacaacaactgtcaacccagtttgtaattaaaagat > 1:2776567‑M1/1‑2 (MQ=255) tacagggtctccttacaacaactgtcaacgcagtttgtaattaaaagat > 1:3419319‑M1/1‑1 (MQ=255) | ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTTGCGCTTAATCCGCAGACCACCGCGACAACAAGGAGTAAAGATGAGAA > NC_000913/1388840‑1388936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |