BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	765,208	Δ5,405 bp		[mngR]–mngB	[mngR], mngA, mngB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	765208	770612	5405	63 [0]	[0] 61	[mngR]–mngB	[mngR],mngA,mngB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 765207	0 (0.000)	57 (0.870)	36/96	0.2	100%	coding (669/723 nt)	mngR	DNA‑binding transcriptional repressor MngR
*	?	NC_000913	770613 =	0 (0.000)	57 (0.870)	36/96	0.2	100%	intergenic (+2/‑845)	mngB/cydA	alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I

CTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG  >  NC_000913/770565‑770662

cgatgattttcgctgcgctatcagggtaaattatagtcatcggtattata                                                  <  1:215565‑M2/2‑1 (MQ=255)

 gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg                                                 >  1:1426631‑M2/48‑50 (MQ=255)

 gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg                                                 >  1:1130775‑M2/48‑50 (MQ=255)

  atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc                                                <  1:1243130‑M2/4‑1 (MQ=255)

  atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc                                                <  1:1050276‑M2/4‑1 (MQ=255)

   tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc                                                >  1:3990988‑M2/46‑49 (MQ=255)

   tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc                                                >  1:1087284‑M2/46‑49 (MQ=255)

   atgattttcgctgcgctatcagggtaaattatagtcatcggtataTAGc                                                >  1:1190409‑M2/46‑49 (MQ=255)

    gattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa                                              >  1:1050975‑M2/45‑50 (MQ=255)

      ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc                                            <  1:4832409‑M2/8‑1 (MQ=255)

       tttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc                                            >  1:5005393‑M2/42‑49 (MQ=255)

       tttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc                                            >  1:1291007‑M2/42‑49 (MQ=255)

       tttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc                                            >  1:1479574‑M2/42‑49 (MQ=255)

         tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaaa                                         >  1:2943274‑M2/40‑50 (MQ=255)

         tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaa                                          <  1:3857615‑M2/10‑1 (MQ=255)

          cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaaa                                         <  1:3661624‑M2/11‑1 (MQ=255)

          cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc                                        >  1:3789854‑M2/39‑50 (MQ=255)

          cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc                                        >  1:3496347‑M2/39‑50 (MQ=255)

          cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc                                        >  1:5052016‑M2/39‑50 (MQ=255)

           gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc                                       <  1:998413‑M2/13‑1 (MQ=255)

           gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc                                       <  1:5054708‑M2/13‑1 (MQ=255)

           gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc                                       <  1:5040536‑M2/13‑1 (MQ=255)

              gcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCg                                      >  1:3307887‑M2/35‑48 (MQ=255)

               cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGaa                                    <  1:2399384‑M2/16‑1 (MQ=255)

                 ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGcc                                 <  1:2833517‑M2/19‑1 (MQ=255)

                 ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc                                  >  1:4388670‑M2/32‑49 (MQ=255)

                 ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc                                  >  1:3482873‑M2/32‑49 (MQ=255)

                 ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc                                  >  1:3825340‑M2/32‑49 (MQ=255)

                 ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc                                  >  1:3235989‑M2/32‑49 (MQ=255)

                 ctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc                                  >  1:523140‑M2/32‑49 (MQ=255)

                  tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca                                >  1:2996617‑M2/31‑50 (MQ=255)

                    tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcaca                              <  1:515475‑M2/22‑1 (MQ=255)

                    tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcac                               <  1:706828‑M2/21‑1 (MQ=255)

                    tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca                                <  1:669983‑M2/20‑1 (MQ=255)

                      agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACata                            <  1:3118523‑M2/24‑1 (MQ=255)

                       gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat                           <  1:1537395‑M2/25‑1 (MQ=255)

                       gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat                           >  1:1083194‑M2/26‑50 (MQ=255)

                        ggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATg                          <  1:2154863‑M2/26‑1 (MQ=255)

                         gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc                         <  1:1042480‑M2/27‑1 (MQ=255)

                         gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc                         <  1:3561409‑M2/27‑1 (MQ=255)

                            aattatagtcatcggtattaTAGCAGTCAAACCGAAGCCACATATgcgc                       <  1:591086‑M2/29‑1 (MQ=255)

                                 tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc                    >  1:1189562‑M2/16‑47 (MQ=255)

                                 tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAg                 <  1:1592196‑M2/35‑1 (MQ=255)

                                 tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAg                 <  1:4739421‑M2/35‑1 (MQ=255)

                                   gtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAt               <  1:324942‑M2/37‑1 (MQ=255)

                                    tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCTGAtt              >  1:4361635‑M2/13‑50 (MQ=255)

                                    tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAtt              >  1:3759960‑M2/13‑50 (MQ=255)

                                      atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgt            >  1:2681850‑M2/11‑50 (MQ=255)

                                        cggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt           >  1:3667298‑M2/9‑49 (MQ=255)

                                         ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgttg          <  1:3380364‑M2/42‑1 (MQ=255)

                                         ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa         >  1:3196294‑M2/8‑50 (MQ=255)

                                         ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa         >  1:299529‑M2/8‑50 (MQ=255)

                                         ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa         >  1:2526348‑M2/8‑50 (MQ=255)

                                             ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaaa     <  1:252820‑M2/47‑1 (MQ=255)

                                             ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACa       >  1:2139547‑M2/4‑48 (MQ=255)

                                              taTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg    >  1:1155265‑M2/3‑50 (MQ=255)

                                              taTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg    >  1:1126663‑M2/3‑50 (MQ=255)

                                               aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg   >  1:1536008‑M2/2‑50 (MQ=255)

                                               aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg   >  1:1112947‑M2/2‑50 (MQ=255)

                                               aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg    <  1:3917523‑M2/48‑1 (MQ=255)

                                                tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgcg  >  1:1588706/1‑48 (MQ=255)

CTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG  >  NC_000913/770565‑770662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`