| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 69 [0] | [0] 68 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 65 (0.990) | 45/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCG > NC_000913/4596965‑4597063 | tttagctatctgtataacctgaatgttagtactcattcttcctggtagta < 1:3476677‑M2/1‑1 (MQ=255) tagctatctgtataacctgaatgttagtactcattcttcctggtagtAAg > 1:930632‑M2/48‑50 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAg < 1:3216563‑M2/3‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg < 1:2721519‑M2/4‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg < 1:848888‑M2/4‑1 (MQ=255) ctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGCg < 1:3522069‑M2/6‑1 (MQ=255) tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:4350017‑M2/44‑48 (MQ=255) atctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:1428696‑M2/43‑47 (MQ=255) atctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:2659333‑M2/43‑47 (MQ=255) tctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:3662656‑M2/42‑46 (MQ=255) tctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:4624518‑M2/42‑46 (MQ=255) tctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:2268852‑M2/42‑46 (MQ=255) tctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:1199610‑M2/42‑46 (MQ=255) tctgtataacctgaatgttagtactcattcttcctggtagtAAGGCga < 1:3002225‑M2/7‑1 (MQ=255) ctgtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat > 1:398609‑M2/41‑50 (MQ=255) tgtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat > 1:1665185‑M2/40‑49 (MQ=255) gtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatta > 1:838843‑M2/39‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCgaga < 1:4353887‑M2/9‑1 (MQ=255) ataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:3431974‑M2/37‑49 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGattatt > 1:1608375‑M2/36‑49 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta < 1:4814789‑M2/15‑1 (MQ=255) aacctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta > 1:4862450‑M2/35‑49 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta > 1:4263368‑M2/34‑48 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaaa < 1:2435823‑M2/17‑1 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaa < 1:5007602‑M2/16‑1 (MQ=255) cctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAg > 1:4906470‑M2/33‑50 (MQ=255) cctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAg > 1:1693761‑M2/33‑50 (MQ=255) cctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAg > 1:4396691‑M2/33‑50 (MQ=255) tgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt > 1:183322‑M2/31‑50 (MQ=255) tgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt > 1:1029776‑M2/31‑50 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg < 1:2290973‑M2/21‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg < 1:3412423‑M2/21‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:2964053‑M2/29‑50 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGcc < 1:3281214‑M2/23‑1 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGcc < 1:3336892‑M2/23‑1 (MQ=255) tgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCa < 1:348527‑M2/24‑1 (MQ=255) tgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCa < 1:5134408‑M2/24‑1 (MQ=255) tgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCa < 1:3793052‑M2/24‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg < 1:4242339‑M2/26‑1 (MQ=255) tagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:1987436‑M2/24‑49 (MQ=255) tagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:662857‑M2/24‑49 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 1:2449755‑M2/28‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 1:2344051‑M2/28‑1 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc < 1:4290637‑M2/30‑1 (MQ=255) actcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg > 1:2905131‑M2/20‑50 (MQ=255) actcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg > 1:1321888‑M2/20‑50 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGt > 1:751894‑M2/19‑50 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGt > 1:2283656‑M2/19‑50 (MQ=255) cattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc > 1:2916521‑M2/17‑50 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc < 1:2152017‑M2/34‑1 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc < 1:5084346‑M2/34‑1 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCg > 1:411937‑M2/16‑50 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg > 1:4455025‑M2/15‑50 (MQ=255) cttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 1:4413213‑M2/13‑49 (MQ=255) ttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 1:4005650‑M2/12‑49 (MQ=255) ttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 1:3885144‑M2/12‑49 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt < 1:203750‑M2/42‑1 (MQ=255) ggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt > 1:3163163‑M2/7‑50 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt < 1:1060867‑M2/44‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:3954469‑M2/45‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:2188239‑M2/45‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt > 1:253187‑M2/6‑50 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg < 1:1863910‑M2/46‑1 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTggg < 1:4934124‑M2/48‑1 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTggg < 1:441033‑M2/48‑1 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 1:3596754‑M2/49‑1 (MQ=255) aaGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgcg > 1:2914619/1‑50 (MQ=255) aaGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgcg > 1:1302772/1‑50 (MQ=255) | GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCG > NC_000913/4596965‑4597063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |