mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 26 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 941,713 | 0 | T | G | 35.8% | 123.0 / 27.7 | 67 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase subunit A |
| * | NC_000913 | 3,328,921 | 0 | C | T | 30.9% | 78.9 / 50.5 | 55 | intergenic (‑206/‑42) | greA/dacB | transcription elongation factor GreA/peptidoglycan DD‑endopeptidase DacB |
| * | NC_000913 | 624,589 | 0 | T | C | 30.6% | 116.8 / 64.0 | 72 | intergenic (‑79/‑296) | fepB/entC | ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC |
| * | NC_000913 | 1,489,174 | 0 | G | T | 30.4% | 121.9 / 13.1 | 46 | G315C (GGT→TGT) | aldA | aldehyde dehydrogenase A |
| * | NC_000913 | 1,159,820 | 0 | C | T | 29.6% | 96.4 / 19.9 | 54 | E578K (GAA→AAA) | fhuE | ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| * | NC_000913 | 121,507 | 0 | A | T | 29.4% | 101.3 / 20.2 | 52 | L15L (CTT→CTA) | aroP | aromatic amino acid:H(+) symporter AroP |
| * | NC_000913 | 2,349,145 | 0 | A | C | 29.2% | 105.3 / 12.6 | 48 | F110V (TTC→GTC) | inaA | putative lipopolysaccharide kinase InaA |
| * | NC_000913 | 2,628,625 | 0 | A | C | 29.2% | 96.0 / 10.6 | 49 | V105G (GTC→GGC) | pdeF | cyclic di‑GMP phosphodiesterase PdeF |
| * | NC_000913 | 4,101,514 | 0 | G | T | 27.5% | 113.9 / 14.1 | 40 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter |
| * | NC_000913 | 4,457,105 | 0 | A | G | 27.1% | 100.9 / 12.2 | 48 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| * | NC_000913 | 3,947,829 | 0 | G | A | 26.2% | 82.6 / 16.8 | 42 | L47F (CTT→TTT) | hdfR | DNA‑binding transcriptional dual regulator HdfR |
| * | NC_000913 | 551,231 | 0 | A | G | 25.0% | 85.0 / 14.8 | 46 | S265G (AGT→GGT) | ybcF | putative carbamate kinase |
| * | NC_000913 | 2,040,075 | 0 | C | G | 25.0% | 107.5 / 12.9 | 45 | L200V (CTG→GTG) | msrP | periplasmic protein‑L‑methionine sulfoxide reductase catalytic subunit |
| * | NC_000913 | 2,483,264 | 0 | T | A | 24.4% | 100.3 / 11.2 | 41 | I26F (ATT→TTT) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 2,483,268 | 0 | T | A | 24.4% | 100.5 / 15.1 | 41 | L24F (TTA→TTT) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 1,032,711 | 0 | A | C | 24.1% | 118.3 / 12.9 | 54 | V191V (GTA→GTC) | hyaA | hydrogenase 1 small subunit |
| * | NC_000913 | 4,296,060 | 0 | C | T | 23.7% | 228.6 / 82.6 | 114 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,404,734 | 0 | A | C | 23.6% | 114.9 / 14.3 | 55 | G113G (GGT→GGG) | nuoA | NADH:quinone oxidoreductase subunit A |
| * | NC_000913 | 4,093,134 | 0 | T | G | 22.1% | 154.1 / 14.9 | 71 | Y102S (TAC→TCC) | rhaM | L‑rhamnose mutarotase |
| * | NC_000913 | 3,813,272 | 0 | C | T | 21.3% | 188.4 / 12.9 | 75 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase |