| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 100 [0] | [0] 97 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 97 (0.990) | 59/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
GCAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGAT > NC_000913/819726‑819823 | gcagGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCt > 1:598896/1‑50 (MQ=255)gcagGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCt > 1:5643448/1‑50 (MQ=255)gcagGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCt < 1:739552/50‑1 (MQ=255) cAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTt > 1:2346053‑M1/1‑49 (MQ=255) cAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTt < 1:5420313‑M1/50‑2 (MQ=255) aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt < 1:2320498‑M1/50‑3 (MQ=255) aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt > 1:4941102‑M1/1‑48 (MQ=255) aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt < 1:1388746‑M1/50‑3 (MQ=255) aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt < 1:216393‑M1/50‑3 (MQ=255) aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt > 1:5662668‑M1/1‑48 (MQ=255) gcggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttg > 1:3808591‑M1/1‑46 (MQ=255) ggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaag < 1:2386549‑M1/50‑7 (MQ=255) gcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc < 1:5818364‑M1/50‑8 (MQ=255) acaAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc < 1:4501817‑M1/49‑8 (MQ=255) cAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcg < 1:1992740‑M1/50‑9 (MQ=255) cAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcg < 1:3037703‑M1/50‑9 (MQ=255) cAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:571816‑M1/1‑42 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:282771‑M1/1‑41 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:604177‑M1/1‑41 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:4872456‑M1/1‑41 (MQ=255) aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgag < 1:2108176‑M1/50‑11 (MQ=255) aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgag < 1:6274491‑M1/50‑11 (MQ=255) aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgag < 1:4167843‑M1/50‑11 (MQ=255) aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgag > 1:1657988‑M1/1‑40 (MQ=255) aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgag < 1:3816101‑M1/50‑11 (MQ=255) aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGCCACCGCTttgaagcgag > 1:4523677‑M1/1‑40 (MQ=255) aaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagc < 1:480183‑M1/50‑12 (MQ=255) aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc < 1:3147890‑M1/50‑13 (MQ=255) aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc < 1:4019387‑M1/50‑13 (MQ=255) aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc < 1:4121437‑M1/50‑13 (MQ=255) cGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccg > 1:7439675‑M1/1‑37 (MQ=255) cGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccg > 1:3345398‑M1/1‑37 (MQ=255) gCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgc > 1:4791338‑M1/1‑36 (MQ=255) cTGGTATTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct < 1:511020‑M1/50‑16 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:4617570‑M1/1‑35 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:4344107‑M1/1‑35 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct < 1:499421‑M1/50‑16 (MQ=255) tGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:2924373‑M1/1‑34 (MQ=255) tGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:969032‑M1/1‑34 (MQ=255) ggTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctc > 1:1805113‑M1/1‑33 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctc < 1:798075‑M1/48‑17 (MQ=255) tAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaat < 1:5785675‑M1/50‑20 (MQ=255) tAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaa > 1:2246548‑M1/1‑31 (MQ=255) gTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaata < 1:7245951‑M1/49‑21 (MQ=255) ttttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatact < 1:6507227‑M1/50‑23 (MQ=255) ttttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatact < 1:4779570‑M1/50‑23 (MQ=255) ttttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatac > 1:2502205‑M1/1‑28 (MQ=255) tttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta > 1:1617318‑M1/1‑27 (MQ=255) tttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactac < 1:2490805‑M1/49‑25 (MQ=255) ttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacac > 1:6086789‑M1/1‑24 (MQ=255) tGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacac < 1:4554367‑M1/49‑27 (MQ=255) gTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactt > 1:1238086‑M1/1‑22 (MQ=255) gTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacact < 1:5489616‑M1/49‑28 (MQ=255) gTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacact < 1:7442039‑M1/49‑28 (MQ=255) ttAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactt < 1:7485733‑M1/49‑29 (MQ=255) ttAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactt < 1:4546990‑M1/49‑29 (MQ=255) ttAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactt < 1:1070956‑M1/49‑29 (MQ=255) ttAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactt < 1:2636505‑M1/49‑29 (MQ=255) aGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt > 1:6949277‑M1/1‑19 (MQ=255) aGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt < 1:2606405‑M1/49‑31 (MQ=255) gCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacacttttta < 1:4103626‑M1/50‑33 (MQ=255) gCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacacttttt < 1:3838021‑M1/49‑32 (MQ=255) gCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt > 1:3723025‑M1/1‑18 (MQ=255) cGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttagc < 1:7157105‑M1/50‑35 (MQ=255) ggATAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca < 1:675884‑M1/50‑36 (MQ=255) ggATAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca < 1:2197217‑M1/50‑36 (MQ=255) ggATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:6105972‑M1/1‑15 (MQ=255) ggATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:5074670‑M1/1‑15 (MQ=255) gATAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcag < 1:5039626‑M1/50‑37 (MQ=255) gATAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcag < 1:1663982‑M1/50‑37 (MQ=255) tAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcagag < 1:5545329‑M1/50‑39 (MQ=255) aaGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:6310433‑M1/1‑11 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagcagagat < 1:6393445‑M1/50‑41 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagcagagat < 1:4293296‑M1/50‑41 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:1564777‑M1/1‑10 (MQ=255) ggCACCGCTttgaagcgagccgctcaatactacactttttagcagagatc < 1:1362435‑M1/50‑42 (MQ=255) ggCACCGCTttgaagcgagccgctcaatactacactttttagcagagatc < 1:4945470‑M1/50‑42 (MQ=255) ggCACCGCTttgaagcgagccgctcaatactacactttttagcagagat > 1:6948679‑M1/1‑9 (MQ=255) cACCGCTttgaagcgagccgctcaatactacactttttagcagagatcag > 1:3675745‑M1/1‑7 (MQ=255) cACCGCTttgaagcgagccgctcaatactacactttttagcagagatcag > 1:2392011‑M1/1‑7 (MQ=255) aCCGCTttgaagcgagccgctcaatactacactttttagcagagatcagt > 1:2483888‑M1/1‑6 (MQ=255) aCCGCTttgaagcgagccgctcaatactacactttttagcagagatcagt < 1:6661310‑M1/50‑45 (MQ=255) ccGCTttgaagcgagccgctcaatactacgctttttagcagagatcagtc < 1:5068514‑M1/50‑46 (MQ=255) ccGCTttgaagcgagccgctcaatactacactttttagcagagatcagtc < 1:1762730‑M1/50‑46 (MQ=255) ccGCTttgaagcgagccgctcaatactacactttttagcagagatcagtc < 1:4122757‑M1/50‑46 (MQ=255) ccGCTttgaagcgagccgctcaatactacactttttagcagagatcagtc < 1:839822‑M1/50‑46 (MQ=255) ccGCTttgaagcgagccgctcaatactacactttttagcagagatcagtc < 1:4534269‑M1/50‑46 (MQ=255) ccGCTttgaagcgagccgctcaatactacactttttagcagagatcagt > 1:4791284‑M1/1‑5 (MQ=255) cGCTttgaagcgagccgctcaatactacactttttagcagagatcagtca > 1:5124422‑M1/1‑4 (MQ=255) gCTttgaagcgagccgctcaatcctacactttttagcagagatcagtcac > 1:7040701‑M1/1‑3 (MQ=255) gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac > 1:6093685‑M1/1‑3 (MQ=255) gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac < 1:238260‑M1/50‑48 (MQ=255) gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac < 1:5471606‑M1/50‑48 (MQ=255) gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac < 1:4219223‑M1/50‑48 (MQ=255) gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac < 1:1037184‑M1/50‑48 (MQ=255) cTttgaagcgagccgctcaatactacactttttagcagagatcagtcacg < 1:2318452‑M1/50‑49 (MQ=255) cTttgaagcgagccgctcaatactacactttttagcagagatcagtcacg > 1:1742694‑M1/1‑2 (MQ=255) cTttgaagcgagccgctcaatactacactttttagcagagatcagtcacg > 1:6127739‑M1/1‑2 (MQ=255) tttgaagcgagccgctcaatactacactttttagcagagatcagtcacg > 1:6856336‑M1/1‑1 (MQ=255) tttgaagcgagccgctcaatactacactttttagcagagatcagtcacg > 1:3943972‑M1/1‑1 (MQ=255) | GCAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGAT > NC_000913/819726‑819823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |