| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 101 [0] | [0] 103 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 99 (1.010) | 61/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
Only 100 of 103 total aligned reads displayed.
AAGGAGCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCC > NC_000913/1004637‑1004735 | tgtcatttaaaggcattatcatatttacgaagagatcaggatgataacgt < 1:305848‑M2/1‑1 (MQ=255)tgtcatttaaaggcattatcatatttacgaagagatcaggatgataacgt < 1:4471720‑M2/1‑1 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt > 1:3943221‑M2/48‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt > 1:1209547‑M2/48‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt > 1:6650301‑M2/48‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt > 1:5283472‑M2/48‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt < 1:6492391‑M2/3‑1 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt > 1:6048842‑M2/48‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgtt < 1:2371746‑M2/2‑1 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgtt < 1:3471107‑M2/2‑1 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg < 1:4150542‑M2/4‑1 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc > 1:6485178‑M2/46‑50 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc > 1:60196‑M2/46‑50 (MQ=255) tttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGcc > 1:5125093‑M2/45‑50 (MQ=255) ttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:4659843‑M2/44‑50 (MQ=255) ttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:1347819‑M2/44‑50 (MQ=255) ttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:6986089‑M2/44‑50 (MQ=255) ttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:4438548‑M2/44‑50 (MQ=255) taaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg < 1:3119783‑M2/7‑1 (MQ=255) taaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg < 1:1621232‑M2/7‑1 (MQ=255) aaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGc < 1:2376168‑M2/8‑1 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg > 1:7358355‑M2/41‑50 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg < 1:4984550‑M2/10‑1 (MQ=255) aaggcattataatatttacgaagagatcaggatgataacgTTTGCCGCAg > 1:4895348‑M2/41‑50 (MQ=255) aggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAgg < 1:5221438‑M2/11‑1 (MQ=255) aggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAgg > 1:148665‑M2/40‑50 (MQ=255) ggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGt < 1:6870577‑M2/12‑1 (MQ=255) gcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGt > 1:7406050‑M2/38‑49 (MQ=255) gcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGt > 1:1768245‑M2/38‑49 (MQ=255) gcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTc < 1:3005698‑M2/13‑1 (MQ=255) cattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTc > 1:7244447‑M2/37‑49 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa < 1:7363369‑M2/15‑1 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa > 1:4055886‑M2/36‑50 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa < 1:3272837‑M2/15‑1 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa > 1:3874991‑M2/36‑50 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt < 1:4695422‑M2/16‑1 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt > 1:2225293‑M2/35‑50 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:5689680‑M2/34‑50 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:2208741‑M2/34‑50 (MQ=255) atcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt < 1:161872‑M2/17‑1 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTc < 1:7140449‑M2/18‑1 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTccc < 1:4179135‑M2/20‑1 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCt > 1:2716420‑M2/30‑50 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtt < 1:7356191‑M2/22‑1 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt > 1:5279695‑M2/27‑50 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt < 1:4424218‑M2/24‑1 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCttt < 1:2118812‑M2/23‑1 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCttt < 1:3498758‑M2/23‑1 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt < 1:616410‑M2/27‑1 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc < 1:6159407‑M2/29‑1 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc < 1:5401403‑M2/29‑1 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:2567795‑M2/22‑50 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:1523959‑M2/22‑50 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:2377874‑M2/21‑49 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCg < 1:4730449‑M2/30‑1 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCg > 1:3584974‑M2/20‑49 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCg > 1:4407009‑M2/20‑49 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGa < 1:1161911‑M2/31‑1 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGaa < 1:6130742‑M2/32‑1 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGaa > 1:7088759‑M2/19‑50 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc > 1:2793219‑M2/18‑50 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc < 1:1205635‑M2/33‑1 (MQ=255) agatcaggatgataacgTTTGCCGCAGGACAATTCCCTTTTGGTCCGAAc < 1:3885239‑M2/33‑1 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACt > 1:1014344‑M2/17‑50 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACt > 1:6294426‑M2/17‑50 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACt > 1:3867180‑M2/17‑50 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACt > 1:2390131‑M2/17‑50 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACt > 1:4743242‑M2/17‑50 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc < 1:6607704‑M2/35‑1 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc < 1:1370224‑M2/35‑1 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc < 1:6800239‑M2/35‑1 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc < 1:7242149‑M2/35‑1 (MQ=255) tcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg > 1:3177031‑M2/15‑50 (MQ=255) tcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg > 1:2217247‑M2/15‑50 (MQ=255) caggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg > 1:6600279‑M2/14‑49 (MQ=255) aggatgataacgTTCGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGca > 1:397656‑M2/13‑50 (MQ=255) ggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGca > 1:7057251‑M2/12‑49 (MQ=255) ggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGca > 1:3165057‑M2/12‑49 (MQ=255) gatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcaca < 1:5161916‑M2/40‑1 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat < 1:4295957‑M2/41‑1 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat < 1:3146453‑M2/41‑1 (MQ=255) tgataacgTTTGCCGTAGGTCAATTCCCTTTTGGCCCGAACTCGCACat > 1:6546050‑M2/9‑49 (MQ=255) tgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACata < 1:5032033‑M2/42‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataat < 1:5927618‑M2/44‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa > 1:1233025‑M2/7‑49 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa < 1:5012752‑M2/43‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa > 1:6583608‑M2/7‑49 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa > 1:7086212‑M2/7‑49 (MQ=255) taacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataata < 1:4012036‑M2/45‑1 (MQ=255) aacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc > 1:6061914‑M2/5‑50 (MQ=255) aacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc > 1:5902476‑M2/5‑50 (MQ=255) aacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc > 1:6767195‑M2/5‑50 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc < 1:2826876‑M2/46‑1 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc < 1:4366367‑M2/46‑1 (MQ=255) cgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGc < 1:4945411‑M2/48‑1 (MQ=255) gTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGcc > 1:6271600‑M2/2‑50 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGccc < 1:7124316/50‑1 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGccc > 1:1692247/1‑50 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGccc > 1:110813/1‑50 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGccc > 1:2842271/1‑50 (MQ=255) | AAGGAGCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCC > NC_000913/1004637‑1004735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |