Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 111 [0] | [0] 104 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1040501 | 0 (0.000) | 103 (1.080) | 58/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG |
Only 100 of 104 total aligned reads displayed.
GAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAAT > NC_000913/1114216‑1114313 | tttactttggttcgtcggcattttgttgatgtgttcgctctccacccttc < 1:4492358‑M2/1‑1 (MQ=255) tgctttggttcgtcggcattttgttgatgtgttcgctctccacccttCa < 1:2251228‑M2/2‑1 (MQ=255) tactttggttcgtcggcattttgttgatgtgttcgctctccacccttCa < 1:911464‑M2/2‑1 (MQ=255) tactttggttcgtcggcattttgttgatgtgttcgctctccaccctcCAg > 1:6896143‑M2/48‑50 (MQ=255) ctttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGtt < 1:6283431‑M2/5‑1 (MQ=255) ctttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGtt > 1:4158994‑M2/46‑50 (MQ=255) ctttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGt < 1:1683616‑M2/4‑1 (MQ=255) ttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTc > 1:3035015‑M2/44‑49 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTc < 1:6622367‑M2/6‑1 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTc < 1:3615266‑M2/6‑1 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCg < 1:6341069‑M2/7‑1 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:4338119‑M2/43‑50 (MQ=255) ggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:5135093‑M2/42‑49 (MQ=255) ggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:5903786‑M2/42‑49 (MQ=255) ggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:2814047‑M2/42‑49 (MQ=255) ggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:121585‑M2/42‑49 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGAt < 1:6225430‑M2/9‑1 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATa > 1:2350770‑M2/41‑50 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATa > 1:79881‑M2/41‑50 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATa < 1:7369098‑M2/10‑1 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATa < 1:3251571‑M2/10‑1 (MQ=255) ttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAc < 1:6157197‑M2/11‑1 (MQ=255) ttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAc < 1:1588654‑M2/11‑1 (MQ=255) ttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAc < 1:4723897‑M2/11‑1 (MQ=255) tcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAcc > 1:6207193‑M2/39‑50 (MQ=255) cgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAcc < 1:2922673‑M2/12‑1 (MQ=255) cgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAcc < 1:4080802‑M2/12‑1 (MQ=255) gtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTg > 1:2183240‑M2/37‑50 (MQ=255) gtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTg < 1:3308797‑M2/14‑1 (MQ=255) gtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTg > 1:534089‑M2/37‑50 (MQ=255) gtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTg > 1:7161861‑M2/37‑50 (MQ=255) tcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgg > 1:5656296‑M2/36‑50 (MQ=255) tcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgg < 1:4973498‑M2/15‑1 (MQ=255) tcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgg > 1:7241560‑M2/36‑50 (MQ=255) cggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg > 1:612417‑M2/35‑50 (MQ=255) cggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg > 1:3626620‑M2/35‑50 (MQ=255) cggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg > 1:1312371‑M2/35‑50 (MQ=255) ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgggg < 1:2688410‑M2/17‑1 (MQ=255) ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgggg > 1:4127745‑M2/34‑50 (MQ=255) ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgggg > 1:2527294‑M2/34‑50 (MQ=255) ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgggg > 1:3443023‑M2/34‑50 (MQ=255) ggcatgttgttgatgtgttcgctctccccccttCAGTTCGATACCTgggg < 1:7335046‑M2/17‑1 (MQ=255) gcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGt < 1:4673376‑M2/18‑1 (MQ=255) gcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGt < 1:518825‑M2/18‑1 (MQ=255) gcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGt < 1:1290504‑M2/18‑1 (MQ=255) attttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAt > 1:4681994‑M2/31‑50 (MQ=255) attttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAt < 1:3514582‑M2/20‑1 (MQ=255) ttttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAtt > 1:607596‑M2/30‑50 (MQ=255) tttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc > 1:1597926‑M2/29‑50 (MQ=255) tttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc > 1:710557‑M2/29‑50 (MQ=255) tttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc > 1:378824‑M2/29‑50 (MQ=255) tttgttgatgtgttcgctctccacccctCAGTTCGATACCTGGGGTATTc > 1:6438262‑M2/29‑50 (MQ=255) ttgttgatgtgttcgctctccacccttCAGTTCGATGCCTGGGGTATTc < 1:6904098‑M2/22‑1 (MQ=255) ttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc < 1:4525435‑M2/22‑1 (MQ=255) ttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc > 1:6311502‑M2/28‑49 (MQ=255) ttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc < 1:785158‑M2/22‑1 (MQ=255) tgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcg < 1:6042743‑M2/23‑1 (MQ=255) tgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcg < 1:1930542‑M2/23‑1 (MQ=255) ttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgac < 1:4475531‑M2/25‑1 (MQ=255) ttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgac < 1:354088‑M2/25‑1 (MQ=255) gatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac > 1:6058920‑M2/23‑50 (MQ=255) gatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac > 1:2342909‑M2/23‑50 (MQ=255) atgtgttcgctctccgcccttCAGTTCGATACCTGGGGTATTcgacgac < 1:2616085‑M2/28‑1 (MQ=255) atgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac < 1:6982744‑M2/28‑1 (MQ=255) atgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac < 1:5213410‑M2/28‑1 (MQ=255) atgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac < 1:6339713‑M2/28‑1 (MQ=255) atgtgtccgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac < 1:5982423‑M2/28‑1 (MQ=255) tgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgacga > 1:7321008‑M2/21‑50 (MQ=255) tgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgacga > 1:7033985‑M2/21‑50 (MQ=255) gtgttcgctctccacccttCAGTTCGATACCTGGGGTATTCgacgacgac > 1:2088336‑M2/20‑50 (MQ=255) gtgttcgctctccacccttCAGTTCGATACCTGGGGTATTCgacgacgac > 1:6634288‑M2/20‑50 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCgacgacgac < 1:89698‑M2/31‑1 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg > 1:2669094‑M2/19‑50 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg < 1:3613766‑M2/32‑1 (MQ=255) ttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg > 1:7038571‑M2/17‑48 (MQ=255) ttcgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGt < 1:796349‑M2/33‑1 (MQ=255) ttcgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTa < 1:6271760‑M2/34‑1 (MQ=255) cgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAg < 1:7437899‑M2/35‑1 (MQ=255) cgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAg < 1:868067‑M2/35‑1 (MQ=255) gctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAc > 1:333614‑M2/14‑50 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt < 1:5022613‑M2/38‑1 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt > 1:5421700‑M2/13‑50 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt > 1:7211241‑M2/13‑50 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt < 1:363974‑M2/38‑1 (MQ=255) tctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTg > 1:6579378‑M2/12‑50 (MQ=255) tctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTg > 1:82657‑M2/12‑50 (MQ=255) tctccacccttCAGTTCGATACCTGGGGTATTCGACGACAACGTAGACTg > 1:5901741‑M2/12‑50 (MQ=255) tccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTg < 1:2038682‑M2/39‑1 (MQ=255) tccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGtt > 1:6519409‑M2/10‑50 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGt < 1:4518701‑M2/40‑1 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTcc < 1:6641823‑M2/43‑1 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTc > 1:5479468‑M2/8‑49 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTc < 1:2497561‑M2/42‑1 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTc > 1:1761669‑M2/8‑49 (MQ=255) cccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAt > 1:4291911‑M2/6‑50 (MQ=255) cccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAt < 1:702516‑M2/45‑1 (MQ=255) ccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAt > 1:1648774‑M2/5‑49 (MQ=255) cttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGa < 1:1059275‑M2/47‑1 (MQ=255) ttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGaa > 1:1568332‑M2/3‑50 (MQ=255) cAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAAt < 1:5811345/49‑1 (MQ=255) | GAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAAT > NC_000913/1114216‑1114313 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |