| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 98 [0] | [0] 98 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 96 (1.000) | 54/96 | 0.0 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
TTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625631‑3625728 | gcggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtt < 1:1382025‑M2/1‑1 (MQ=255)gcggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtt < 1:3584954‑M2/1‑1 (MQ=255) cggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTa < 1:5739958‑M2/2‑1 (MQ=255) cggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTa < 1:6651514‑M2/2‑1 (MQ=255) ggcgtgcggcacgggcattcgcagtgcttgccgaaggaagatcgagtTAc > 1:3153899‑M2/48‑50 (MQ=255) gcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACg < 1:957899‑M2/4‑1 (MQ=255) gcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACg < 1:5787138‑M2/4‑1 (MQ=255) cgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc < 1:3127678‑M2/5‑1 (MQ=255) cgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc > 1:1960890‑M2/46‑50 (MQ=255) tgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCa < 1:2205404‑M2/7‑1 (MQ=255) tgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCa > 1:3626251‑M2/44‑50 (MQ=255) ggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTg > 1:5672588‑M2/41‑50 (MQ=255) ggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTg > 1:4879190‑M2/41‑50 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc < 1:3885345‑M2/13‑1 (MQ=255) acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc < 1:1398999‑M2/13‑1 (MQ=255) cgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTccc < 1:6658675‑M2/14‑1 (MQ=255) gggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTccc > 1:1720827‑M2/36‑49 (MQ=255) gggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTccc > 1:924121‑M2/36‑49 (MQ=255) gggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTccc > 1:2967439‑M2/36‑49 (MQ=255) ggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCaa < 1:2587518‑M2/16‑1 (MQ=255) ggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCaa > 1:2660885‑M2/35‑50 (MQ=255) gcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAAt > 1:3326072‑M2/34‑50 (MQ=255) gcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAAt > 1:1105860‑M2/34‑50 (MQ=255) catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc > 1:4746283‑M2/33‑50 (MQ=255) catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc < 1:1409834‑M2/18‑1 (MQ=255) catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc < 1:3372942‑M2/18‑1 (MQ=255) atttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCg > 1:5740650‑M2/32‑50 (MQ=255) atttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCg > 1:6365253‑M2/32‑50 (MQ=255) atttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCg > 1:2511106‑M2/32‑50 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGt < 1:5176293‑M2/20‑1 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGt > 1:4897427‑M2/31‑50 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGt > 1:7291964‑M2/31‑50 (MQ=255) tgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTc < 1:6678105‑M2/21‑1 (MQ=255) tgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCt > 1:1422193‑M2/29‑50 (MQ=255) tgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCt > 1:6291947‑M2/29‑50 (MQ=255) gcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt > 1:6306388‑M2/28‑50 (MQ=255) gcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCt < 1:2828335‑M2/22‑1 (MQ=255) gcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCt < 1:3231805‑M2/22‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt < 1:2024382‑M2/23‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt < 1:3284709‑M2/23‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt < 1:4015366‑M2/23‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTc > 1:1847795‑M2/27‑50 (MQ=255) agtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTcc < 1:926555‑M2/25‑1 (MQ=255) agtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTcc < 1:394405‑M2/25‑1 (MQ=255) gtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCt < 1:1771078‑M2/26‑1 (MQ=255) gtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCt > 1:5876240‑M2/25‑50 (MQ=255) gtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCt < 1:1901435‑M2/26‑1 (MQ=255) tgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTg < 1:1610975‑M2/27‑1 (MQ=255) tgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTg < 1:6850805‑M2/27‑1 (MQ=255) tgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTg < 1:3280029‑M2/27‑1 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGaa < 1:5367246‑M2/29‑1 (MQ=255) ttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAAt > 1:29717‑M2/21‑50 (MQ=255) gccgaaggaagattgagtTACGTCATTGTCCCAATCGTCTTCCTGAATc < 1:6538710‑M2/31‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAAt < 1:3094234‑M2/30‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc < 1:5165210‑M2/31‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc < 1:5023540‑M2/31‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc < 1:4481314‑M2/31‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc < 1:735266‑M2/31‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:2894387‑M2/19‑50 (MQ=255) ccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:1738716‑M2/18‑49 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgca < 1:5725437‑M2/34‑1 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgca < 1:1272420‑M2/34‑1 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgca < 1:781894‑M2/34‑1 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgca < 1:3079571‑M2/34‑1 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgca < 1:3549107‑M2/34‑1 (MQ=255) gaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag < 1:3353942‑M2/35‑1 (MQ=255) aaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc < 1:3032281‑M2/36‑1 (MQ=255) aaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:7422162‑M2/15‑49 (MQ=255) aaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:4402394‑M2/15‑49 (MQ=255) aggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:7086374‑M2/14‑48 (MQ=255) aggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:844508‑M2/14‑48 (MQ=255) ggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGcagcag > 1:7383827‑M2/13‑50 (MQ=255) ggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGcagcag > 1:6113564‑M2/13‑50 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc < 1:3390574‑M2/39‑1 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc > 1:7446703‑M2/12‑50 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc > 1:3052954‑M2/12‑50 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc < 1:2610611‑M2/39‑1 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc > 1:3793537‑M2/12‑50 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc < 1:4311896‑M2/39‑1 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc < 1:5477733‑M2/39‑1 (MQ=255) gaagattgagaTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc > 1:3151847‑M2/12‑50 (MQ=255) aagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg < 1:7297295‑M2/40‑1 (MQ=255) aagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg < 1:7348488‑M2/40‑1 (MQ=255) aagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg > 1:5136586‑M2/11‑50 (MQ=255) attgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa < 1:3607446‑M2/43‑1 (MQ=255) attgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:2012968‑M2/8‑50 (MQ=255) ttgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt > 1:6386926‑M2/7‑50 (MQ=255) ttgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt > 1:385792‑M2/7‑50 (MQ=255) ttgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt > 1:2911926‑M2/7‑50 (MQ=255) tgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:1338426‑M2/6‑50 (MQ=255) gagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg > 1:1286170‑M2/5‑50 (MQ=255) agtTACGCCGTTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt < 1:6818509‑M2/47‑1 (MQ=255) agtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg < 1:7042863‑M2/46‑1 (MQ=255) agtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt < 1:3947349‑M2/47‑1 (MQ=255) agtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt < 1:85017‑M2/47‑1 (MQ=255) gtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt > 1:4974381‑M2/3‑49 (MQ=255) tACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGa > 1:4762414/1‑49 (MQ=255) tACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGa > 1:4904311/1‑49 (MQ=255) | TTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625631‑3625728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |