| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 131 [0] | [0] 137 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 131 (1.370) | 71/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 137 total aligned reads displayed.
GCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAA > NC_000913/4549663‑4549761 | atggtatttccggttcgataatgcttgtaccaacagggagggaatacgag < 1:738724‑M2/1‑1 (MQ=255) tggtatttccggttcgataatgcttgtaccaacagggagggaatacgag > 1:5356941‑M2/49‑49 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaaa > 1:658977‑M2/47‑50 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaa < 1:2576855‑M2/3‑1 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaa < 1:5770510‑M2/3‑1 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt < 1:2341784‑M2/5‑1 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:1990175‑M2/46‑50 (MQ=255) atttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:5374671‑M2/45‑49 (MQ=255) tttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATca < 1:1904446‑M2/7‑1 (MQ=255) tttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATc < 1:49847‑M2/6‑1 (MQ=255) ttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATca > 1:960963‑M2/43‑49 (MQ=255) tccggttcgataatgcttgtaccaacagggagggaatacgaGAAATcac < 1:2883149‑M2/8‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg < 1:3467399‑M2/10‑1 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:4703305‑M2/39‑50 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa < 1:6632391‑M2/12‑1 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa < 1:3158978‑M2/12‑1 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:2116162‑M2/38‑49 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:3452865‑M2/38‑49 (MQ=255) ttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACa < 1:5976641‑M2/14‑1 (MQ=255) tcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt > 1:5479579‑M2/36‑50 (MQ=255) tcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt > 1:6483375‑M2/36‑50 (MQ=255) tcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt > 1:792440‑M2/36‑50 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt < 1:4381488‑M2/15‑1 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt < 1:403386‑M2/15‑1 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGCAATCACAGGACATTg > 1:4839247‑M2/34‑50 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt < 1:5496007‑M2/16‑1 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTg < 1:7371670‑M2/17‑1 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTg > 1:4160936‑M2/34‑50 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTg < 1:3364029‑M2/17‑1 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc < 1:1699736‑M2/18‑1 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:608210‑M2/32‑49 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt < 1:7237249‑M2/19‑1 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt < 1:820553‑M2/19‑1 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt > 1:2697963‑M2/31‑49 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt > 1:944172‑M2/31‑49 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTaa > 1:4965207‑M2/30‑50 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTaa < 1:680168‑M2/21‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTa < 1:4277513‑M2/20‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTa < 1:4429531‑M2/20‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTa < 1:1088071‑M2/20‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTa < 1:5697440‑M2/20‑1 (MQ=255) tgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAAt > 1:6030546‑M2/29‑50 (MQ=255) tgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAAt < 1:4348118‑M2/22‑1 (MQ=255) gcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATg > 1:1546357‑M2/28‑50 (MQ=255) gcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATg > 1:6449032‑M2/28‑50 (MQ=255) gcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATg > 1:2806421‑M2/28‑50 (MQ=255) cttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATg < 1:6883799‑M2/23‑1 (MQ=255) cttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATg < 1:5701117‑M2/23‑1 (MQ=255) cttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATg < 1:5696164‑M2/23‑1 (MQ=255) tgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTg > 1:7096795‑M2/25‑50 (MQ=255) tgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTg > 1:1067898‑M2/25‑50 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 1:788375‑M2/25‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 1:7067742‑M2/25‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTg < 1:6116817‑M2/26‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg < 1:1673744‑M2/27‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg < 1:1822572‑M2/27‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGt < 1:1796687‑M2/28‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGt < 1:3926396‑M2/28‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGt < 1:2973426‑M2/28‑1 (MQ=255) accaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTa > 1:2649632‑M2/22‑50 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTa < 1:324823‑M2/29‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc < 1:5262779‑M2/30‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc < 1:2440642‑M2/30‑1 (MQ=255) caacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg > 1:5127781‑M2/20‑50 (MQ=255) caacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg < 1:3986710‑M2/31‑1 (MQ=255) acagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGc > 1:4593546‑M2/18‑49 (MQ=255) acagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCa < 1:4596322‑M2/33‑1 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa < 1:255157‑M2/34‑1 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa < 1:7163500‑M2/34‑1 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:2078606‑M2/17‑50 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAat < 1:577356‑M2/35‑1 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAat < 1:1883382‑M2/35‑1 (MQ=255) gggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAata > 1:1433552‑M2/15‑50 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATAtt < 1:3268660‑M2/38‑1 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATAtt < 1:4541997‑M2/38‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa < 1:1508862‑M2/39‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa < 1:2944436‑M2/39‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa > 1:2714800‑M2/12‑50 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa > 1:6013326‑M2/12‑50 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa > 1:1568144‑M2/12‑50 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa < 1:294583‑M2/39‑1 (MQ=255) ggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAcc < 1:708825‑M2/41‑1 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt < 1:6007242‑M2/42‑1 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt < 1:7334344‑M2/42‑1 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt < 1:1920873‑M2/42‑1 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 1:6355935‑M2/43‑1 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 1:4173898‑M2/43‑1 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 1:1160491‑M2/43‑1 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg > 1:529846‑M2/7‑49 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGa < 1:2360319‑M2/44‑1 (MQ=255) tacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg > 1:144677‑M2/6‑48 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAg < 1:3344397‑M2/46‑1 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc > 1:6252143‑M2/3‑49 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt < 1:1289627‑M2/48‑1 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt < 1:3929784‑M2/48‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 1:5394400/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 1:5005329/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 1:4078424/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 1:3540089/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 1:2690614/50‑1 (MQ=255) | GCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAA > NC_000913/4549663‑4549761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |