| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 75 [0] | [0] 72 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 70 (0.730) | 39/96 | 0.5 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15339‑15435 | tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:7154430‑M1/50‑1 (MQ=255)tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:3038366‑M1/50‑1 (MQ=255)tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:648985‑M1/50‑1 (MQ=255) aGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTC > 1:4771538‑M1/1‑49 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCAATCta > 1:1485884‑M1/1‑48 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCta > 1:3612523‑M1/1‑48 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCta < 1:221680‑M1/50‑3 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCt < 1:4371756‑M1/49‑2 (MQ=255) ggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtac < 1:4380522‑M1/50‑4 (MQ=255) gTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacc < 1:5761728‑M1/50‑5 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCttcccc > 1:186417‑M1/1‑43 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctca < 1:2327421‑M1/50‑8 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctca < 1:3613077‑M1/50‑8 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctcca > 1:5273275‑M1/1‑42 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcag < 1:7453805‑M1/50‑9 (MQ=255) gAAGATATGCGAGCACCTGTAAATTGGCGGGGATCACTCtacctcaatg < 1:6800092‑M1/49‑11 (MQ=255) gAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatg < 1:2430275‑M1/49‑11 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGGTTACTCcaccccaatgtg > 1:1562316‑M1/1‑38 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtg < 1:4443988‑M1/50‑13 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtg < 1:5990304‑M1/50‑13 (MQ=255) gATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgta < 1:3627005‑M1/50‑15 (MQ=255) gATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgta < 1:6107025‑M1/50‑15 (MQ=255) gATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgta > 1:3185941‑M1/1‑36 (MQ=255) gATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgta < 1:2747324‑M1/50‑15 (MQ=255) gATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtaactcaatgtgta > 1:7313940‑M1/1‑36 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat < 1:3914441‑M1/50‑16 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat < 1:2289770‑M1/50‑16 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat < 1:326019‑M1/50‑16 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGGTCACCCtacccccatgtgttt > 1:2835683‑M1/1‑34 (MQ=255) atGCGAGCACCTGTAAAGTGGCGGGGATCACCCtacccccatgtgtatcc > 1:6270372‑M1/1‑33 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaa < 1:458321‑M1/50‑21 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcaca < 1:6574896‑M1/49‑20 (MQ=255) gAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaat < 1:4490509‑M1/50‑22 (MQ=255) aGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaata < 1:4206868‑M1/50‑23 (MQ=255) gCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatat < 1:4881078‑M1/50‑24 (MQ=255) gCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatat < 1:7181483‑M1/50‑24 (MQ=255) cgcctgTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatc < 1:192795‑M1/48‑25 (MQ=255) cACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatc < 1:3135224‑M1/50‑25 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatat < 1:2568543‑M1/49‑30 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatat < 1:2537280‑M1/49‑30 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatat < 1:5683986‑M1/49‑30 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 1:2561147‑M1/48‑29 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 1:5495833‑M1/48‑29 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattct < 1:2539038‑M1/50‑33 (MQ=255) gTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattcttt < 1:5661272‑M1/50‑35 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttg < 1:1166044‑M1/50‑36 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttg > 1:2186427‑M1/1‑15 (MQ=255) gCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtg < 1:6390326‑M1/50‑38 (MQ=255) gCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt < 1:4329840‑M1/49‑37 (MQ=255) cGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtgg > 1:2536098‑M1/1‑12 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:6727648‑M1/1‑11 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:1291244‑M1/1‑11 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg < 1:205807‑M1/50‑40 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:3916976‑M1/1‑11 (MQ=255) gggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:7249258‑M1/1‑10 (MQ=255) gggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg < 1:3720851‑M1/50‑41 (MQ=255) ggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggggg < 1:1725572‑M1/50‑42 (MQ=255) ggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggggg < 1:6653333‑M1/50‑42 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:1251116‑M1/1‑8 (MQ=255) aTCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggag < 1:999212‑M1/50‑44 (MQ=255) aTCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggag < 1:5441128‑M1/50‑44 (MQ=255) aTCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggag < 1:4267837‑M1/50‑44 (MQ=255) aTCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggag < 1:3038745‑M1/50‑44 (MQ=255) aTCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggag > 1:1121357‑M1/1‑7 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 1:6511389‑M1/1‑6 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 1:1912266‑M1/1‑6 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 1:1753424‑M1/1‑6 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 1:1042793‑M1/1‑6 (MQ=255) cACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc > 1:4642675‑M1/1‑5 (MQ=255) cACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc > 1:7403978‑M1/1‑5 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct < 1:2905711‑M1/50‑47 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct < 1:1827650‑M1/50‑47 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg < 1:5932955‑M1/50‑48 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg < 1:4645196‑M1/50‑48 (MQ=255) ctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:937895‑M1/1‑1 (MQ=255) | TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15339‑15435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |