| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 65 [0] | [0] 69 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 62 (0.650) | 44/96 | 0.2 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATT > NC_000913/3888383‑3888479 | aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 1:4706419‑M1/1‑49 (MQ=255)aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 1:4341734‑M1/1‑49 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 1:2148625‑M1/1‑48 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcga < 1:5461805‑M1/50‑4 (MQ=255) aCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgac > 1:6480740‑M1/1‑46 (MQ=255) aCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgac < 1:6230133‑M1/50‑5 (MQ=255) aCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgac < 1:6757996‑M1/50‑5 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact > 1:4320940‑M1/1‑45 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact > 1:2758388‑M1/1‑45 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact > 1:2809575‑M1/1‑45 (MQ=255) ctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:7378885‑M1/1‑43 (MQ=255) tGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt < 1:1864168‑M1/48‑7 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcacc < 1:2492147‑M1/50‑11 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac > 1:5141813‑M1/1‑40 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttc < 1:5521173‑M1/47‑8 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTCGCGAGGATAAGTGCcgacttc < 1:1484433‑M1/47‑8 (MQ=255) gtgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcacca < 1:4787740‑M1/50‑12 (MQ=255) gtgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcacca < 1:3156268‑M1/50‑12 (MQ=255) tgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag < 1:1448719‑M1/50‑13 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta < 1:1737272‑M1/50‑15 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta < 1:2121045‑M1/50‑15 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagt < 1:4981869‑M1/49‑14 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagt < 1:5735688‑M1/49‑14 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtat < 1:6754130‑M1/49‑16 (MQ=255) aatGTAGCCTCGTGTCTTGCGAGGAT‑AGTGCcgacttcaccagtattctc > 1:7202087‑M1/1‑31 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctc > 1:5189634‑M1/1‑31 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctc > 1:7337590‑M1/1‑31 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctc > 1:1782194‑M1/1‑31 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattct < 1:4306672‑M1/49‑19 (MQ=255) tGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctct > 1:2229390‑M1/1‑30 (MQ=255) tGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctct < 1:44199‑M1/50‑21 (MQ=255) gTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctg > 1:5020672‑M1/1‑29 (MQ=255) gTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctg > 1:4839243‑M1/1‑29 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctgg > 1:3766247‑M1/1‑28 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctg < 1:5007761‑M1/49‑22 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt < 1:4605351‑M1/49‑24 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt > 1:6100968‑M1/1‑26 (MQ=255) ccTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtta < 1:7452562‑M1/50‑26 (MQ=255) cTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttat > 1:931962‑M1/1‑24 (MQ=255) cTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttat > 1:1393168‑M1/1‑24 (MQ=255) cTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttat > 1:2316076‑M1/1‑24 (MQ=255) tCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatg > 1:175379‑M1/1‑23 (MQ=255) tCGTGTCTTGCGAGGATAAGTGCcgacttcaccagcattctctggttatg > 1:333298‑M1/1‑23 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtc < 1:706784‑M1/50‑30 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 1:3526599‑M1/1‑21 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatg < 1:1040854‑M1/48‑28 (MQ=255) tGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttt > 1:5052710‑M1/1‑15 (MQ=255) cGAGGATAAGTGCcgacttcgccagtattctctggttatgtcaggtttt < 1:3567300‑M1/49‑37 (MQ=255) cGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttg > 1:6387884‑M1/1‑13 (MQ=255) cGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttg < 1:1117509‑M1/50‑38 (MQ=255) cGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttg > 1:7245094‑M1/1‑13 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc > 1:333475‑M1/1‑12 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc < 1:1843917‑M1/50‑39 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc > 1:7268815‑M1/1‑12 (MQ=255) ggATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcct < 1:4141857‑M1/50‑41 (MQ=255) gATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctg < 1:5610978‑M1/50‑42 (MQ=255) gATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctg < 1:4001375‑M1/50‑42 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 1:5911372‑M1/50‑43 (MQ=255) aGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcga < 1:5802674‑M1/49‑45 (MQ=255) gTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaat < 1:2688084‑M1/50‑47 (MQ=255) gTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaat > 1:5680725‑M1/1‑4 (MQ=255) gTGCcgacttcaccaatattctctggttatgtcaggttttgcctgcgaat < 1:4923840‑M1/50‑47 (MQ=255) ccgacttcaccagtattctctggttatgtcaggttttgcctgcgaatgc < 1:1669219‑M1/49‑49 (MQ=255) ccgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg > 1:6898750‑M1/1‑1 (MQ=255) ccgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg > 1:508716‑M1/1‑1 (MQ=255) | AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATT > NC_000913/3888383‑3888479 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |