| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 105 [0] | [0] 101 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 101 (1.030) | 54/98 | 0.0 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
Only 100 of 101 total aligned reads displayed.
TTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482207‑1482304 | acctatcggcagaccgacaagataccacgccagcacatcgcagccatact < 1:2491297‑M2/1‑1 (MQ=255) cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa > 1:782755‑M2/49‑50 (MQ=255) ctatcggcagaccgacaagataccacgccagcacatcgcagccatacTAt < 1:2391534‑M2/3‑1 (MQ=255) ctatcggcagaccgacaagataccacgccagcacatcgcagccatacTAt < 1:7276932‑M2/3‑1 (MQ=255) ctatcggcagaccgacaagataccacgccagcacatcgcagccatacTAt < 1:1493176‑M2/3‑1 (MQ=255) ctatcggcagaccgacaagataccacgccagcacatcgcagccatacTAt > 1:4706018‑M2/48‑50 (MQ=255) tatcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:2337505‑M2/47‑50 (MQ=255) tatcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:1891103‑M2/47‑50 (MQ=255) tatcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:5961426‑M2/47‑50 (MQ=255) atcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:3245784‑M2/46‑49 (MQ=255) tcggcagaccgacaagataccgcgccagcacatcgcagccatacTATGCa < 1:2928307‑M2/6‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATg < 1:5005951‑M2/4‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATg < 1:6998529‑M2/4‑1 (MQ=255) cggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:2672907‑M2/44‑47 (MQ=255) gcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaa < 1:2181986‑M2/9‑1 (MQ=255) gcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGa > 1:4905985‑M2/42‑49 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:4430467‑M2/41‑50 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:3793953‑M2/40‑49 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:6898853‑M2/40‑49 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc > 1:3093849‑M2/39‑49 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACa < 1:6278816‑M2/12‑1 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACa < 1:1976760‑M2/12‑1 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACa < 1:3240119‑M2/12‑1 (MQ=255) ccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAAt > 1:3354006‑M2/37‑50 (MQ=255) ccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAAt > 1:6177840‑M2/37‑50 (MQ=255) ccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAAt > 1:1696832‑M2/37‑50 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg < 1:3297480‑M2/15‑1 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg > 1:1945909‑M2/36‑50 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc > 1:5454326‑M2/35‑50 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc < 1:118094‑M2/16‑1 (MQ=255) acaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCt > 1:6019971‑M2/34‑50 (MQ=255) acaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCt > 1:7022148‑M2/34‑50 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg > 1:4928197‑M2/33‑50 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt < 1:4626578‑M2/19‑1 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt > 1:927936‑M2/32‑50 (MQ=255) aagataccacgcaagcacatcgcagccatacTATGCAGAAACAATGCTGt < 1:3402954‑M2/19‑1 (MQ=255) agataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc < 1:906434‑M2/20‑1 (MQ=255) agataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc < 1:6574027‑M2/20‑1 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc > 1:5768826‑M2/30‑49 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc > 1:4722456‑M2/30‑49 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCg < 1:2876722‑M2/21‑1 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCg < 1:5729617‑M2/21‑1 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGa > 1:4699057‑M2/29‑50 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGa > 1:4034702‑M2/29‑50 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt < 1:4839426‑M2/23‑1 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt > 1:6775154‑M2/28‑50 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt < 1:3710099‑M2/23‑1 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt > 1:23669‑M2/28‑50 (MQ=255) accacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg > 1:568087‑M2/27‑50 (MQ=255) accacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg > 1:6024381‑M2/27‑50 (MQ=255) accacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg > 1:5806526‑M2/27‑50 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATgg < 1:10421‑M2/25‑1 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATgg > 1:3577261‑M2/26‑50 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATgg < 1:1960830‑M2/25‑1 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATgg > 1:1934771‑M2/26‑50 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATgg < 1:2703610‑M2/25‑1 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg < 1:6386411‑M2/24‑1 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg < 1:3232945‑M2/24‑1 (MQ=255) acacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg < 1:3015077‑M2/24‑1 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc < 1:6153460‑M2/26‑1 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc > 1:1152204‑M2/25‑50 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc < 1:2530260‑M2/26‑1 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct > 1:2118915‑M2/24‑50 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct < 1:6501793‑M2/27‑1 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct < 1:5921518‑M2/27‑1 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct < 1:6869924‑M2/27‑1 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct > 1:5132885‑M2/24‑50 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct > 1:1157696‑M2/24‑50 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct < 1:4135875‑M2/27‑1 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg < 1:5851169‑M2/28‑1 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg < 1:5955505‑M2/28‑1 (MQ=255) gccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctgc < 1:3206336‑M2/29‑1 (MQ=255) gccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctgc < 1:6740831‑M2/29‑1 (MQ=255) tcgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTc < 1:758329‑M2/38‑1 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:5744840‑M2/11‑47 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:3226374‑M2/11‑47 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCa < 1:4534949‑M2/39‑1 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGTCGTTTTTGCGTCAGa > 1:1636841‑M2/10‑50 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa < 1:2534634‑M2/41‑1 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:1886183‑M2/9‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:2498784‑M2/9‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:6207369‑M2/9‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:4467400‑M2/9‑50 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt > 1:24399‑M2/8‑50 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt < 1:6135388‑M2/43‑1 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt < 1:152361‑M2/43‑1 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 1:1041782‑M2/6‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 1:2678494‑M2/6‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 1:6587298‑M2/6‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 1:4544833‑M2/6‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 1:2451029‑M2/6‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt < 1:6450848‑M2/45‑1 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg > 1:5587457‑M2/5‑50 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 1:518426‑M2/46‑1 (MQ=255) tacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGc > 1:585842‑M2/4‑50 (MQ=255) tacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGc < 1:1100925‑M2/47‑1 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:5814809‑M2/3‑50 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:3220216‑M2/3‑50 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:4301639‑M2/3‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt > 1:7302762‑M2/2‑50 (MQ=255) | TTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482207‑1482304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |