| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 115 [0] | [0] 115 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 112 (1.150) | 62/98 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
Only 100 of 115 total aligned reads displayed.
ACGAGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAATA > NC_000913/2476130‑2476228 | tgacgggtaaaaagtggataaaataattttacccaccggatttttaccct < 1:2839838‑M2/1‑1 (MQ=255)tgacgggtaaaaagtggataaaataattttacccaccggatttttaccct < 1:5539924‑M2/1‑1 (MQ=255) acgggtaaaaagtggataaaataattttacccaccggatttttacccTag < 1:1183930‑M2/3‑1 (MQ=255) acgggtaaaaagtggataaaataattttacccaccggatttttacccTa < 1:3384700‑M2/2‑1 (MQ=255) acgggtaaaaagtggataaaataattttacccaccggatttttacccTa < 1:271969‑M2/2‑1 (MQ=255) acgggtaaaaagtggataaaataattttacccaccggatttttacccTa < 1:3784340‑M2/2‑1 (MQ=255) cgggtaaaaagtggataaaataattttacccaccggatttttacccTaga < 1:6307928‑M2/4‑1 (MQ=255) ggtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:3744947‑M2/45‑50 (MQ=255) ggtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc < 1:1159463‑M2/6‑1 (MQ=255) ggtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc < 1:7185035‑M2/6‑1 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGcc < 1:7039757‑M2/7‑1 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:2504102‑M2/44‑49 (MQ=255) taaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa < 1:1195739‑M2/8‑1 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCAt < 1:1937323‑M2/9‑1 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa < 1:2425787‑M2/10‑1 (MQ=255) aaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:7194901‑M2/40‑49 (MQ=255) aagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:5809241‑M2/39‑48 (MQ=255) aagtggataaaataattttacccaccggatttttacccTAGAGACATACa < 1:2112603‑M2/12‑1 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg > 1:3807849‑M2/38‑50 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg > 1:5852683‑M2/38‑50 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg < 1:4061107‑M2/13‑1 (MQ=255) gtggataaaataattttacccaccggatttttacccTAGAGCCATACAGc < 1:2462315‑M2/14‑1 (MQ=255) gtggataaaataattttacccaccggatttttacccTAGAGCCATACAGc > 1:199727‑M2/37‑50 (MQ=255) gtggataaaataattttacccaccggatttttacccTAGAGCCATACAGc > 1:662979‑M2/37‑50 (MQ=255) gtggataaaataattttacccaccggatttttacccTAGAGCCATACAGc < 1:2863433‑M2/14‑1 (MQ=255) gtggataaaataattttacccaccggatttttacccTAGAGCCATACAGc > 1:793093‑M2/37‑50 (MQ=255) ggataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt > 1:7132009‑M2/35‑50 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt > 1:3504603‑M2/34‑49 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt > 1:4880823‑M2/34‑49 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt > 1:3302755‑M2/34‑49 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt > 1:5322371‑M2/34‑49 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTc < 1:6387599‑M2/17‑1 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTcaca < 1:4052665‑M2/20‑1 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTcaca < 1:1944302‑M2/20‑1 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTcaca < 1:5132528‑M2/20‑1 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac > 1:700609‑M2/30‑50 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac < 1:5752697‑M2/21‑1 (MQ=255) aataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACt < 1:1019439‑M2/22‑1 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:6108712‑M2/28‑50 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:3251494‑M2/27‑49 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:7380352‑M2/27‑49 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:4613413‑M2/27‑49 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:4212987‑M2/27‑49 (MQ=255) aattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGa > 1:5968440‑M2/26‑50 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt < 1:4854472‑M2/26‑1 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt < 1:3378716‑M2/26‑1 (MQ=255) ttttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:46132‑M2/24‑49 (MQ=255) ttttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATg < 1:5655411‑M2/27‑1 (MQ=255) tttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:5411843‑M2/23‑48 (MQ=255) tttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:4713851‑M2/23‑48 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg > 1:1828567‑M2/21‑50 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg > 1:3690484‑M2/21‑50 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg < 1:2745754‑M2/29‑1 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg < 1:4512582‑M2/29‑1 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg < 1:5908753‑M2/30‑1 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg < 1:2774145‑M2/30‑1 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg < 1:5526611‑M2/30‑1 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 1:1801471‑M2/20‑50 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc > 1:813379‑M2/19‑50 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc > 1:2244318‑M2/19‑50 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc < 1:4334748‑M2/32‑1 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc > 1:2804733‑M2/19‑50 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt > 1:6068134‑M2/18‑50 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt < 1:5112175‑M2/33‑1 (MQ=255) caccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTg < 1:2965636‑M2/34‑1 (MQ=255) caccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTg < 1:5281941‑M2/34‑1 (MQ=255) caccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTg > 1:5316959‑M2/17‑50 (MQ=255) accggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:5373931‑M2/16‑50 (MQ=255) accggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt < 1:6868129‑M2/35‑1 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg < 1:2149141‑M2/38‑1 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg > 1:1098147‑M2/13‑50 (MQ=255) gatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGt < 1:1979151‑M2/39‑1 (MQ=255) gatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGt < 1:7195925‑M2/39‑1 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt > 1:7046455‑M2/11‑50 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt > 1:108417‑M2/11‑50 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGACCTGTCAGtt > 1:1049789‑M2/11‑50 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt > 1:3940630‑M2/10‑50 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt > 1:3637638‑M2/10‑50 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt > 1:2327276‑M2/10‑50 (MQ=255) tttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTc < 1:4131734‑M2/42‑1 (MQ=255) ttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt > 1:784808‑M2/7‑49 (MQ=255) ttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt > 1:1892413‑M2/7‑49 (MQ=255) tacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCtt < 1:815332‑M2/44‑1 (MQ=255) acccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa > 1:3033623‑M2/5‑49 (MQ=255) acccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa > 1:6064825‑M2/5‑49 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaa < 1:2650548‑M2/47‑1 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaa < 1:3080323‑M2/46‑1 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaa > 1:2144041‑M2/4‑49 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaa > 1:6581008‑M2/4‑49 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa < 1:3918467‑M2/48‑1 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:2148844‑M2/3‑50 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa < 1:6583548‑M2/48‑1 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:800063‑M2/3‑50 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:574206‑M2/3‑50 (MQ=255) ctaGTGCCATACAGCCTCACACTCGATGAGGCTTGTCCTTTTTTTaaaa > 1:5174104/2‑49 (MQ=255) cTAGAGCCATACAGCCTCACACTCGCTGAGGCCTGTCAGTTTCTTaaaa > 1:1706705‑M2/2‑49 (MQ=255) cTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:6916291‑M2/2‑49 (MQ=255) cTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:4022212‑M2/2‑49 (MQ=255) taGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAata > 1:4930694/1‑50 (MQ=255) taGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAata > 1:1662609/1‑50 (MQ=255) | ACGAGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAATA > NC_000913/2476130‑2476228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |