| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.4% | 343.6 / 206.2 | 214 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base C (66/85); new base T (26/37); total (92/122) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.53e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 220 total aligned reads displayed.
GCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGC > NC_000913/4296011‑4296109 | gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc > 1:3789157/1‑50 (MQ=38)gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc < 1:5052959/50‑1 (MQ=38) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACg > 1:3590006/1‑50 (MQ=38) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACg > 1:6498719/1‑50 (MQ=38) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACg < 1:4459322/50‑1 (MQ=38) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACg < 1:4724365/50‑1 (MQ=38) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACg < 1:4822325/50‑1 (MQ=38) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACg > 1:7036633/1‑50 (MQ=38) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACg > 1:5311694/1‑50 (MQ=38) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACg < 1:2412560/50‑1 (MQ=38) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGc > 1:5327108/1‑50 (MQ=38) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc < 1:4114272/50‑1 (MQ=255) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGcc < 1:1904275/50‑1 (MQ=38) gATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt > 1:4997669/1‑50 (MQ=255) gATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt > 1:2517600/1‑50 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTg < 1:6904977/50‑1 (MQ=38) ttttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGa < 1:7432552/50‑1 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg > 1:7360032/1‑50 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGAt < 1:5149032/49‑1 (MQ=38) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGAt < 1:1326393/49‑1 (MQ=38) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg < 1:6765487/49‑1 (MQ=255) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg < 1:1280867/49‑1 (MQ=255) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc > 1:3925351/1‑50 (MQ=38) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc > 1:2468034/1‑50 (MQ=38) gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc < 1:418964/49‑1 (MQ=255) gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc > 1:1661346/1‑49 (MQ=38) gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc > 1:1109269/1‑49 (MQ=38) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCg < 1:2604963/49‑1 (MQ=255) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGa > 1:2071727/1‑50 (MQ=255) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGa > 1:374266/1‑50 (MQ=255) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCg < 1:1201476/49‑1 (MQ=38) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGa > 1:6777162/1‑50 (MQ=38) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGa > 1:5952418/1‑50 (MQ=38) aGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGAc > 1:5381211/1‑50 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGAc < 1:1419069/49‑1 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGAc < 1:6082639/49‑1 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACg < 1:4710606/50‑1 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACg < 1:6048194/50‑1 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGAc < 1:5233054/49‑1 (MQ=38) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGAc < 1:1733542/49‑1 (MQ=38) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACg > 1:4929870/1‑50 (MQ=38) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGc > 1:6326087/1‑50 (MQ=38) tCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCt > 1:3467914/1‑50 (MQ=255) tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCt < 1:3919786/50‑1 (MQ=38) cGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt > 1:5717657/1‑50 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg < 1:797853/50‑1 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg > 1:3422408/1‑50 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg > 1:6793311/1‑50 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg < 1:4341409/50‑1 (MQ=255) gATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGc > 1:6632532/1‑50 (MQ=255) gATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGc > 1:7018332/1‑50 (MQ=255) gATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGc > 1:5563435/1‑50 (MQ=255) gATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGc > 1:6945694/1‑50 (MQ=255) aTAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc > 1:1025487/1‑50 (MQ=255) tAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcg < 1:1885363/50‑1 (MQ=255) aaGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc > 1:2642013/1‑50 (MQ=255) aaGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc > 1:7177687/1‑50 (MQ=255) aaGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc > 1:6217334/1‑50 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgcg > 1:1609035/1‑50 (MQ=255) gCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTc < 1:3718774/50‑1 (MQ=255) cGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCt < 1:1535440/50‑1 (MQ=255) cGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCt < 1:4607404/50‑1 (MQ=255) cGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCt < 1:1378477/50‑1 (MQ=255) gTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt < 1:232952/50‑1 (MQ=255) gTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt < 1:1237023/50‑1 (MQ=255) gTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt < 1:3052143/50‑1 (MQ=255) gTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt > 1:6397241/1‑49 (MQ=255) gTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt > 1:1838513/1‑49 (MQ=255) tttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa < 1:2090889/50‑1 (MQ=255) tACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt < 1:6921640/49‑1 (MQ=12) tACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt < 1:2893292/49‑1 (MQ=12) tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt < 1:843889/49‑1 (MQ=255) aCGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATc < 1:1320543/49‑1 (MQ=255) cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCa < 1:3798009/49‑1 (MQ=255) cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCa < 1:7170854/49‑1 (MQ=255) cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAg > 1:6668656/1‑50 (MQ=255) cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAg > 1:6248884/1‑50 (MQ=255) cgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 1:2910144/1‑50 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 1:933159/1‑49 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 1:5029578/1‑49 (MQ=38) aTCCGACATCAACGCCTGTTGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 1:1076037/1‑50 (MQ=255) aTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc < 1:7291468/50‑1 (MQ=40) aTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 1:550528/1‑50 (MQ=40) aTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 1:7110941/1‑50 (MQ=40) cGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc > 1:5405745/1‑49 (MQ=255) gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc > 1:2264090/1‑48 (MQ=255) gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCa < 1:592711/50‑1 (MQ=255) gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCa < 1:5736184/50‑1 (MQ=255) gACATCAACGCCTGATGCGACGCTTCCCGCGTCTTATCAGGCCTACGc > 1:1752036/1‑48 (MQ=255) aCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAg < 1:868652/50‑1 (MQ=255) cATCAACGCCTGATGCGACGCTTGCTGCGTCTTATCAGGCCTACGCCAgt > 1:1063360/1‑49 (MQ=255) aTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa > 1:1525428/1‑49 (MQ=255) aTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGAc < 1:3370562/50‑1 (MQ=255) aTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGAc < 1:2128865/50‑1 (MQ=255) tCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACa < 1:2788096/50‑1 (MQ=255) aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgc > 1:611875/1‑50 (MQ=38) aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAg < 1:4516052/49‑1 (MQ=38) aCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcg < 1:1513693/50‑1 (MQ=35) aCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcg < 1:1139409/50‑1 (MQ=35) cGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcgc < 1:3528997/50‑1 (MQ=32) | GCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGC > NC_000913/4296011‑4296109 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |