Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,090,282 C→T intergenic (+30/‑65) yggI → / → endA conserved protein YggI/DNA‑specific endonuclease I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,090,2820CT100.0% 425.7 / NA 103intergenic (+30/‑65)yggI/endAconserved protein YggI/DNA‑specific endonuclease I
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (57/46);  total (57/46)

Only 100 of 103 total aligned reads displayed.

CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCT  >  NC_000913/3090235‑3090325
                                               |                                           
cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                           >  1:1102074/1‑50 (MQ=255)
cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                           <  1:1271492/50‑1 (MQ=255)
cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                           <  1:1784370/50‑1 (MQ=255)
 aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg                                          >  1:1215200/1‑50 (MQ=255)
 aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg                                          <  1:7010543/50‑1 (MQ=255)
  gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGc                                         >  1:880658/1‑50 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                        >  1:745424/1‑50 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                        <  1:7230873/50‑1 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                        <  1:6735886/50‑1 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                        >  1:4056417/1‑50 (MQ=255)
    tGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                        >  1:6241308/1‑49 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTg                                       <  1:4369843/48‑1 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTg                                       <  1:6058294/48‑1 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa                                      <  1:4132878/49‑1 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                     >  1:1805918/1‑50 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                     >  1:841885/1‑50 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                     >  1:806116/1‑50 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                     <  1:2160688/50‑1 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                     <  1:4856984/50‑1 (MQ=255)
       ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt                                    <  1:6472472/50‑1 (MQ=255)
       ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt                                    >  1:3329902/1‑50 (MQ=255)
       ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCGGATTTGGCTGAtt                                    <  1:4780443/50‑1 (MQ=255)
         gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                   <  1:607424/49‑1 (MQ=255)
         gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                   >  1:5107635/1‑49 (MQ=255)
         gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                   <  1:4316663/49‑1 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGc                                  <  1:4832675/49‑1 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGc                                  <  1:3789742/49‑1 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                 >  1:7432187/1‑50 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                 >  1:4508310/1‑50 (MQ=255)
           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                 >  1:567801/1‑49 (MQ=255)
           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                 >  1:6388379/1‑49 (MQ=255)
            aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa                               <  1:6409863/50‑1 (MQ=255)
            aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa                               >  1:1632280/1‑50 (MQ=255)
             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                              <  1:5761145/50‑1 (MQ=255)
             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                              >  1:5487508/1‑50 (MQ=255)
              aTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc                             <  1:2379474/50‑1 (MQ=255)
              aTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                              >  1:3477561/1‑49 (MQ=255)
               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc                             >  1:4325633/1‑49 (MQ=255)
               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc                             >  1:1793024/1‑49 (MQ=255)
               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc                             >  1:760576/1‑49 (MQ=255)
                aaCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa                            >  1:4157790/1‑49 (MQ=255)
                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaa                          <  1:601397/50‑1 (MQ=255)
                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa                           >  1:6639739/1‑49 (MQ=255)
                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa                           >  1:4846694/1‑49 (MQ=255)
                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa                           >  1:7031461/1‑49 (MQ=255)
                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                         <  1:6457325/50‑1 (MQ=255)
                   cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                         >  1:7000131/1‑49 (MQ=255)
                   cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                         >  1:5699657/1‑49 (MQ=255)
                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                         >  1:4353206/1‑48 (MQ=255)
                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                         >  1:3198135/1‑48 (MQ=255)
                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                         >  1:6622567/1‑48 (MQ=255)
                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACa                       <  1:3480416/50‑1 (MQ=255)
                     tCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                      >  1:1269090/1‑50 (MQ=255)
                      cTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                     >  1:3687999/1‑50 (MQ=255)
                       tGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt                    >  1:4474752/1‑50 (MQ=255)
                       tGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt                    >  1:568061/1‑50 (MQ=255)
                       tGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt                    >  1:5017161/1‑50 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                      <  1:3801727/46‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                     <  1:5496424/47‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                     <  1:1147127/47‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                     <  1:5088132/47‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                  >  1:2640936/1‑50 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                  >  1:79290/1‑50 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                  <  1:3976228/50‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                  >  1:6186019/1‑50 (MQ=255)
                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                 <  1:6272338/50‑1 (MQ=255)
                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                <  1:7198494/50‑1 (MQ=255)
                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                <  1:933687/50‑1 (MQ=255)
                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                <  1:3796223/50‑1 (MQ=255)
                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                >  1:4860937/1‑50 (MQ=255)
                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                >  1:3938166/1‑50 (MQ=255)
                            tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc               >  1:3824655/1‑50 (MQ=255)
                             aTCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc               >  1:3806056/1‑49 (MQ=255)
                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa             <  1:501301/50‑1 (MQ=255)
                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa             >  1:4163173/1‑50 (MQ=255)
                               cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc            >  1:1601713/1‑50 (MQ=255)
                               cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc            >  1:1959529/1‑50 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc            <  1:2695368/49‑1 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc            <  1:3049836/49‑1 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc            <  1:5842140/49‑1 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg           >  1:1819930/1‑50 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg           >  1:5233074/1‑50 (MQ=255)
                                 ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt          >  1:2900342/1‑50 (MQ=255)
                                 ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt          >  1:4643863/1‑50 (MQ=255)
                                  gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt         <  1:2720603/50‑1 (MQ=255)
                                  gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt         <  1:92421/50‑1 (MQ=255)
                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg        >  1:2198230/1‑50 (MQ=255)
                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg        <  1:5337123/50‑1 (MQ=255)
                                    aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc       >  1:1759959/1‑50 (MQ=255)
                                    aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc       >  1:1071245/1‑50 (MQ=255)
                                     cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt      <  1:2055087/50‑1 (MQ=255)
                                     cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt      <  1:1222186/50‑1 (MQ=255)
                                      tttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg     >  1:1688198/1‑50 (MQ=255)
                                      tttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg     >  1:2407769/1‑50 (MQ=255)
                                       ttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg    >  1:568446/1‑50 (MQ=255)
                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg    <  1:3890208/49‑1 (MQ=255)
                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg    <  1:1802428/49‑1 (MQ=255)
                                         ccTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc   <  1:3452027/49‑1 (MQ=255)
                                          cTGATTTGGCTGATTGCATGCCAAAACAGCTTTCGCTACGTTGCTGGCt  <  1:170910/49‑1 (MQ=39)
                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCt  <  1:3810625/49‑1 (MQ=255)
                                               |                                           
CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCT  >  NC_000913/3090235‑3090325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑