Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,665,7020CA33.7% 221.5 / 45.2 92A37S (GCG→TCG) gadXacid resistance regulon transcriptional activator; autoactivator
Reads supporting (aligned to +/- strand):  ref base C (56/5);  new base A (0/31);  total (56/36)
Fisher's exact test for biased strand distribution p-value = 1.27e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

TTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGGATGATAATGTG  >  NC_000913/3665468‑3665927
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                   
ttttACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaaaa                                                                                                                                                                                                                                 >  1:71977/1‑239 (MQ=255)
ttttACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaaaa                                                                                                                                                                                                                                 >  1:1685137/1‑239 (MQ=255)
                       cGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATa                                                                                                                                                                                                        >  1:113878/1‑239 (MQ=255)
                       cGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATa                                                                                                                                                                                                        >  1:1644721/1‑239 (MQ=255)
                          tgttttttATTCTGCATTAGTCGCCCAACTTCCAAAAAAACAGGAATTCCTCTACTAAAGTGAGGACGGATAAATAAAAAATCTTTTTTATGTGAAAGAAAATTTACTCCCTCCTCTTGGACCATGGGAAAAATAAAAAAATGCGTTCCCCTTAAAACAAAAAAAAAATTTACACCCCATTTTTCTCTTAATTTTTGTTTTCCCCCCAAAAACACCAGGTCACCGCCATTAAAATAGCg                                                                                                                                                                                                     <  2:1283252/233‑1 (MQ=255)
                               ttttttCTGCGATAGTGGCCCAATTTACTAAAAACAAGGATTTTCTCTACTACGGTGATGAAAGAGAAAGAAAAAATTTTTTTTATGTGAATGAAGATTTAATCCTCCCTCCTTGAGCCGCGGGAAAAAAAATGAAAGCTTTTCCCTGGACACGAATAAAAAATTTTCAACACACTTATCTCCTCAATTTTGGCTTCCACCCAAAAAAACCGGGTCCCCGCCATTAAAATAGCGATAtt                                                                                                                                                                                                <  2:2012938/235‑1 (MQ=255)
                               cTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGatat                                                                                                                                                                                                 >  1:452638/1‑238 (MQ=255)
                                 tATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTc                                                                                                                                                                                               >  1:328628/1‑238 (MQ=255)
                                        cGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAc                                                                                                                                                                                             >  1:1173984/1‑233 (MQ=255)
                                        cGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTa                                                                                                                                                                                        >  1:773597/1‑238 (MQ=255)
                                          aTAGTTGCGCATCTTCCTAAAAAAAAAAAATCTTTCTACTAAGGTGATAAAGGAGTAAAGAAGAAACTTTTTTATGTGTAAGAAATTTTCACCCCCCCTCCTGGAACTGGGGAAAAAAAAATAAATGCGTCCCCCTGGACCCAAAAAAAAATTTCTAACCCCTTTTGCCTTCACGATTTTGTCTGGCATCCAAAAAAACAGGGTGACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                                                                                                     <  2:1841716/239‑1 (MQ=255)
                                               gcccaaaCTTCCAAAAAAACGAAATTATCTCAAATAAAGTGATAAGTGATAAAGAAAAAACTTTTTTTTGGTGAATAAAGATTAAATCCCCCCTCCTGGAAAATGGGGAAAAATAATGAAGGCGTCCCCCTTGACAAGAAAAAAAAATTTCAACCACCTTTACCTACAAAATTTTGATTCGCACCCAAAAAAACGGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATggg                                                                                                                                                                                <  2:792307/234‑2 (MQ=255)
                                                      cTTCCAAAAAAACAAGAATATTTCAACAACAGTGAAGAACGAGTAAAGAAAAATTTTTTTTATGTGAATAAAGTTTTAATCCCTCCCCATTGAGCATGGGGAAAAATAAAAAAAGCGTTTCCTTTGACAAAAAAAAAAATTTTTCAACACACTTTTCTCCAAAATTTGGGTTTGCACCCAAAAAAACCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAata                                                                                                                                                                         <  2:1016860/239‑1 (MQ=255)
                                                         ccTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAAc                                                                                                                                                                                      >  1:1188124/1‑223 (MQ=255)
                                                           tGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAttt                                                                                                                                                                    >  1:492383/1‑239 (MQ=255)
                                                                       ttctttctACTACAGTGAAGAACGATTAAAGAAGAATTTTTTTTATGTGCATGAATTTTTAATGCCTCCTCCTTGAGCCTGGGGAAAAATAATGAAAGCGTGTCCCTTGACACGAATACAAATTTTTCAACACCCTTATCTACACGATTTTGGCTTGCACCCACAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa                                                                                                                                                        <  2:328628/234‑1 (MQ=255)
                                                                       atgtctcTACTAAGGTGATGAACGATTAAAGAAGAAATTTTTTTAGGTGAAGAAATTTTAAATCCCTCCCCCTTGAGAATGGGAAAAAATAATTAAGGCTTGCCCTTTAACACAAAAAAAAATTTTCAACCACATTTATCTATTAAATTTTGGTTTCCACCCAAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa                                                                                                                                                        <  2:1082147/236‑1 (MQ=255)
                                                                       atatCTCTCCAACAGTGAAGTACGGAAAAGAGAGAACTGTTTTTATGCGGATGAATTTTTAAAGCCTCCAACTTGAACAGGGGAAAAAATAATGAAAGTGGGTCTATAGACCAAAATAAAAATTTTAAAACACATTTCTCTACTAAATTTGGCTTTTCACCCGCAAAAACCAGTTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa                                                                                                                                                        <  2:492383/239‑1 (MQ=255)
                                                                            cctcatacAGTAGTGAACGAGAAATAAAAAAATTTTTTAATGTGAAAGAAGATTTAATCCCTCCCCCTTGAGAATGGGGAAAAAAAATAAAAGCGTGCCCTTTGACACAAATACAAAATTTTAAACCCCCTTATCCCCACAATTTTGGTTCCCACCCAAAAAACCCAGGTCCCCGCCATTAAAATAGCGATAtt                                                                                                                                                                                                <  2:1500806/189‑1 (MQ=255)
                                                                              tactacAGTGATGAACGAGTAAAGAAAAATCTTTTTTATTTACATGAAGATTTATCGCCTCCTCTTTGAAAATCGGAAAAAAAAATGAAGGCGGGTCCCTTGACAAAAAAAAAAAATTCCAAACACACTTATTTCCGCGATTTTGCCTTCCCCCCGAAAAACCCGGGGCACCGCCATTAAAATAGCGATATTCACCAt                                                                                                                                                                                          <  2:649914/198‑1 (MQ=255)
                                                                                    agggataaACGAAAAATGAAGAAATTTTTTAATGAAAATGAAGTTTTAACGCCTCCCCCTGAAGAATGGGGAAAAAAAAGAAAGGCGTTTCCCTTAACAAAAAAAAAAAATTTACAACACTTTTTTCAACTGAATTTGGGTTTCAACCCAAAAAAACGAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACaa                                                                                                                                           <  2:808073/236‑1 (MQ=255)
                                                                                    aGTGAAGAAGGATTAAGGAAGAATTTTTTTTAGGGAAAGGAAGATTTAATCCCTCCCCCTGAGCCATAGGAAAAAAAAATAAAAGCTTCTCCCTTGACACAAATAAAAAATTTTCAACACATTTCTCTACCAAAATTTGGCTTCCCCCCGAAAAAACCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACaa                                                                                                                                           <  2:1253972/239‑1 (MQ=255)
                                                                                      tgatgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAAc                                                                                                                                                                                      >  1:1500806/1‑194 (MQ=255)
                                                                                      tgatgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAAt                                                                                                                                          >  1:1761796/1‑238 (MQ=255)
                                                                                      tgatgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAAt                                                                                                                                          >  1:779309/1‑238 (MQ=255)
                                                                                      tgatgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAAt                                                                                                                                          >  1:1060875/1‑238 (MQ=255)
                                                                                        atgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAAc                                                                                                                                                                                      >  1:1327003/1‑192 (MQ=255)
                                                                                        atgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGt                                                                                                                                                                                >  1:649914/1‑198 (MQ=255)
                                                                                        atgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTAt                                                                                                                                                                  >  1:2047461/1‑212 (MQ=255)
                                                                                        atgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTc                                                                                                                                        >  1:2266146/1‑238 (MQ=255)
                                                                                        atgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTc                                                                                                                                        >  1:1079357/1‑238 (MQ=255)
                                                                                                gTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTa                                                                                                                                 >  1:526347/1‑237 (MQ=255)
                                                                                                gTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGt                                                                                                                               >  1:2078057/1‑239 (MQ=255)
                                                                                                gTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGt                                                                                                                               >  1:438448/1‑239 (MQ=255)
                                                                                                 aaagaaagaaATTTTTTATGGTGCAGAAATATTAAACCCCCCCCCTTTAAACATGGGAAAAAAAAATAAACGCGTGTCCCTTGACACAAATACAAAATTTCAACCACATTTTTCTACCTAATTTGGGTTGCAACCCGAAAAAACCGGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGt                                                                                                                                  <  2:1024286/230‑1 (MQ=255)
                                                                                                  aaTGAAGAATGTTTTTTATGTACATGAAGTTTTAATCCCCCCCCCTTGAGCAGCGGAAAAAAAAATAAAAGCGTCTCCCTTGAAACAAATAAAAAATTTTCAACCCACTTCTCTACTCAAATGTGTCTTGCACCCAAAAAAACCAGGACACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGa                                                                                                                             <  2:627614/239‑1 (MQ=255)
                                                                                                         agaaCTTTTTTAATGCGAATGAAATTTTAACGCCCCCCCTGTGCACAACGGAAAAAAAAAAGAACGCTTTTCCCTTAACAAAAAAAAAAAATTTTCAGCACATTTATCTCCTCAATTTGGTCTCGCACCCGAAAAAACAAGTTAACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCa                                                                                                                        <  2:779309/237‑1 (MQ=255)
                                                                                                          aaaCTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATa                                                                                                                      >  1:627614/1‑239 (MQ=255)
                                                                                                                 tttATGTGAAGAAAATTTAATTCCCTCCCCTTGGAACAGGGAGAAAAAAAATAAAAGCGTCTCCCTAGACAAAAAAAAAAATTTTCAAACCCTTTTATCTCCTCAATTTTGGCTTGCACCAGAAAAAACAGGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACt                                                                                                               <  2:452638/239‑1 (MQ=255)
                                                                                                                   ttatggtgAATAAATATTTAATCCCCCCTCTTTAAGAAGGGGAAAAAATAATGAAGGCGTGTCCCTTGAAAAAAAAAAAAAATTTTAACCACTCTTATCTACTCGAATGTGGTTTGCACCCAAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACt                                                                                                               <  2:1060875/234‑1 (MQ=255)
                                                                                                                          gCATGACGATTTAATGCCTCCTCCTTGAGCCTCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAGTTTGGCTTGCATCCGCACAAACCAGGTCACCGCCATTAAAATAGCGATCTTCACCATTAACCATGGTGAGAATCTATTTATGTCTTGCATACGCAATTAGACAATTCCCAt                                                                                                                                    >  1:778423/1‑211 (MQ=255)
                                                                                                                            ataaaGATTAAACCCCCCCTCCTGAACCATCGGAAAAAATAAGAAACCCGTTCCCCTTAACAAAAATAAAAAATTTTCAACCCCCTTACCTACTAGATTTTGCCTTGCACCCAAAAAACCCAGATCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAata                                                                                                                                                                         <  2:342122/169‑1 (MQ=255)
                                                                                                                              gacattttAAGTCCTCCTCCTGGAGCAACGGAAAAAAAAATAAAGGCTATTCCCTTAACAAAAAAACAAAATTTTCAACACCCTTATTTACTCATTTTTGGTTTGCATCCAAAAAAACCGGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACAt                                                                                                    <  2:1373667/234‑1 (MQ=255)
                                                                                                                              gAAGTTTTATTGCCTCCTCCTTGAGCATGGGAAAAAATAAAGAAGGCGTTACCCTTAACAATATAACAAATTTTCAAACACTCTTTTCTACTCAAATTTGGTTTGCATCCCAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACAt                                                                                                    <  2:1125064/239‑1 (MQ=255)
                                                                                                                                   tttaacggCCCCCTCCTTGAGAATCGGAAAAAAGAATGAAGGCTGCTCCTGTGACATAAAAAAAAAATTTACAACACACTTATCTACTGAAATTTGGTTTACAACAAAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAAtt                                                                                                                                         <  2:2121742/191‑1 (MQ=255)
                                                                                                                                      aaTGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTc                                                                                                                                                               >  1:342122/1‑172 (MQ=255)
                                                                                                                                      aaTGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACatat                                                                                            >  1:1373667/1‑239 (MQ=255)
                                                                                                                                       aTGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCa                                                                                                                                                                                           >  1:1195523/1‑143 (MQ=255)
                                                                                                                                            cctctcttggAGCATGGGAAAAAATAAATAAGGCGTTTCCTTAGACACAAATAAAAAATTTACAACACACTTATCTACTCAATTTTGTTTTCCATCCAAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTg                                                                                       <  2:1761796/230‑1 (MQ=255)
                                                                                                                                             tcctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                                                                                                                                                                          >  1:216413/1‑123 (MQ=255)
                                                                                                                                             tcctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGt                                                                                                                               >  1:2121742/1‑198 (MQ=255)
                                                                                                                                               ctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTa                                                                                                                                 >  1:1784698/1‑194 (MQ=255)
                                                                                                                                                cctttGAGCAGGGGAAAAAAAAAAAAAAGCGTCTCCCTTAACAAAAATAAAAAATTTTCACCACACTTATCTACTAAATTTTGGTTTCCACCCCAAAAACCCAGGTCACCGCCATTAAAATAGCGATAtt                                                                                                                                                                                                <  2:673743/127‑1 (MQ=255)
                                                                                                                                                 cctTGAGCAGCGGAAAAAAAAATAAAAGCGTGTCCCTTGACACAAATAAAAAATTTTAAACACACTTATCTACTCAATTTTGGTTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAg                                                                                                                                                                                                       <  1:2307270/122‑1 (MQ=255)
                                                                                                                                                           tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                                                                                                                                                                          >  1:1388834/1‑110 (MQ=255)
                                                                                                                                                           tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAAc                                                                                                                                                                                      >  1:673743/1‑130 (MQ=255)
                                                                                                                                                            cGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                                                                                                                                                                          >  1:1319261/1‑109 (MQ=255)
                                                                                                                                                            cGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                                                                                                                                                                          >  2:1365448/1‑109 (MQ=255)
                                                                                                                                                            cGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAc                                                                                                                                                                                             >  2:2307270/1‑122 (MQ=255)
                                                                                                                                                            cGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAAc                                                                                                                                                                                      >  1:706192/1‑129 (MQ=255)
                                                                                                                                                            cGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGc                                                                         >  1:2154432/1‑238 (MQ=255)
                                                                                                                                                                  aaaTAAGAAAGGCGTGCCCTTTGACAAAAAAAAAAAATTTAAACCCCTTTTATCTACTCGATTTTGGTTTCCACCCGAAAAACCCAGCTCACCGCCATTAAAATAGCGATATTCACCAtt                                                                                                                                                                                         <  1:262117/120‑1 (MQ=255)
                                                                                                                                                                         gAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACAAACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAc                                                                                                                                                                                             >  1:1091673/1‑109 (MQ=255)
                                                                                                                                                                            aGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                                                                                                                                                               >  2:262117/1‑120 (MQ=255)
                                                                                                                                                                            aGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACt                                                                                        >  1:822385/1‑207 (MQ=255)
                                                                                                                                                                               cGTGCCCCTAAACACAAAAACAAATTTTACAACCCACTTATCTACACGAATTTGTCTTGCGCCCAAAAAAACCTGATCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa                                                                                                                                                        <  2:140133/141‑1 (MQ=255)
                                                                                                                                                                                  gtCCCTTGACAAAAAAAAAAAATTTTCAACACTCTTATCTACTCGATTTTGGCTTGCATCCGAAAAACCCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACAt                                                                                                    <  2:146723/190‑1 (MQ=255)
                                                                                                                                                                                        tGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAAc                                                                                                                                                                                                                              >  2:118481/1‑63 (MQ=255)
                                                                                                                                                                                        tGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAAc                                                                                                                                                                                                                              <  1:118481/63‑1 (MQ=255)
                                                                                                                                                                                         gACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGa                                                                                                                                              >  1:140133/1‑141 (MQ=255)
                                                                                                                                                                                            acaaaTAAAAATTTTTCAACACACTAATCTACCTAAATTTGGTTTGCATCCGCAAAAACAAGGCCACCGCCATTAAAATAGCGATATTCACCAt                                                                                                                                                                                          <  2:1143549/91‑1 (MQ=255)
                                                                                                                                                                                            acGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTa                                                                                          >  1:146723/1‑190 (MQ=255)
                                                                                                                                                                                             aaaacaCAAACTTTCAAACATACTTACCCACGTGATTTTGGCTTGCACCCCAAAAACCCAGTACTCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGataaa                                        <  1:159130/234‑1 (MQ=255)
                                                                                                                                                                                               aaTACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAAc                                                                                                                                                                                                                              >  2:182970/1‑56 (MQ=255)
                                                                                                                                                                                               aaTACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAAc                                                                                                                                                                                                                              <  1:182970/56‑1 (MQ=255)
                                                                                                                                                                                                aTACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAc                                                                                                                                                                                             >  2:1246343/1‑87 (MQ=255)
                                                                                                                                                                                                      aaTTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGt                                                                                                                                                                                >  1:1143549/1‑94 (MQ=255)
                                                                                                                                                                                                          ttCAACACACTTATCTACTCGAATATGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAAAATATTTATGTATTGCa                                                                                                                                                          >  1:2148478/1‑112 (MQ=255)
                                                                                                                                                                                                                    ctttATCTACTCGAATTTAGCTGCCATCAGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGgag                   <  2:2154432/237‑1 (MQ=255)
                                                                                                                                                                                                                    atttATCTACTCGAATTTGCCTTGCCCCCAAAAAAACCAGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGt                                                                                                                                                                                <  2:1941793/80‑1 (MQ=255)
                                                                                                                                                                                                                    acTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGt                                                                                                                                                                                >  1:1061408/1‑82 (MQ=255)
                                                                                                                                                                                                                     tttATCTACTAAATTTTGGCTTACACCCAAAAAACCCAGTCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCgg                      <  1:1786681/234‑1 (MQ=255)
                                                                                                                                                                                                                      ttATCTACTCAATTTTGGCTTGCACCCAAAAAACCCGGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGt                                                                                                                                                                                <  2:479920/80‑1 (MQ=255)
                                                                                                                                                                                                                              tCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat                                                                                                                                                                      >  1:1941793/1‑82 (MQ=255)
                                                                                                                                                                                                                              tCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGgatga         >  2:330378/1‑239 (MQ=255)
                                                                                                                                                                                                                                gAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat                                                                                                                                                                      >  1:479920/1‑80 (MQ=255)
                                                                                                                                                                                                                                gAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat                                                                                                                                                                      >  1:1892700/1‑80 (MQ=255)
                                                                                                                                                                                                                                gAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTa                                                                                                                                 >  1:1885584/1‑117 (MQ=255)
                                                                                                                                                                                                                                gAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGGATGATa       >  1:1919306/1‑239 (MQ=255)
                                                                                                                                                                                                                                         tggttgccaccGAAAAAACCCGAGACACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTTTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGGATGATAAtgtg  <  2:1644721/230‑1 (MQ=255)
                                                                                                                                                                                                                                              cATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAAc                                                                                                                                                                                      >  1:2120559/1‑52 (MQ=255)
                                                                                                                                                                                                                                              cATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGAtt                                                                                                                           >  1:1881260/1‑111 (MQ=255)
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                   
TTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGGATGATAATGTG  >  NC_000913/3665468‑3665927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: