mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 753,125 | 0 | T | A | 40.7% | 30.3 / 17.4 | 27 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| * | NC_000913 | 3,206,435 | 0 | C | T | 37.0% | 31.1 / 16.0 | 27 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 3,206,452 | 0 | C | A | 35.7% | 43.5 / 13.2 | 28 | intergenic (‑196/‑11) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 1,383,722 | 0 | G | A | 29.6% | 42.1 / 10.8 | 27 | F80F (TTC→TTT) | ycjW | LacI family putative transcriptional repressor |
| * | NC_000913 | 4,101,514 | 0 | G | T | 28.6% | 84.4 / 10.5 | 35 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase, Mn/2‑keto‑3‑deoxy‑D‑gluconate transporter |
| * | NC_000913 | 2,386,862 | 0 | G | A | 28.0% | 39.7 / 11.7 | 25 | intergenic (+31/‑72) | yfbL/yfbM | putative M28A family peptidase/DUF1877 family protein |
| * | NC_000913 | 1,825,031 | 0 | C | T | 25.0% | 75.2 / 17.0 | 40 | intergenic (‑94/+109) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 4,098,391 | 0 | A | C | 22.9% | 99.2 / 11.8 | 48 | Y219S (TAC→TCC) | rhaS | transcriptional activator of rhaBAD and rhaT |
| * | NC_000913 | 4,296,060 | 0 | C | T | 21.5% | 127.4 / 35.6 | 65 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 596 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 825508 | 58 (1.110) | 13 (0.260) | 12/344 | 2.7 | 19.4% | coding (601/1107 nt) | ybhR | putative ABC transporter permease |
| ? | NC_000913 | = 825997 | 52 (1.030) | coding (112/1107 nt) | ybhR | putative ABC transporter permease | |||||
| * | ? | NC_000913 | 2132766 = | 60 (1.150) | 12 (0.240) | 10/342 | 3.1 | 18.8% | coding (632/840 nt) | wcaA | putative glycosyl transferase |
| ? | NC_000913 | 2133133 = | 46 (0.910) | coding (265/840 nt) | wcaA | putative glycosyl transferase | |||||
| * | ? | NC_000913 | = 2066696 | 67 (1.280) | 30 (0.600) | 10/342 | 3.1 | 31.7% | noncoding (658/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2102175 | NA (NA) | noncoding (769/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274387 | NA (NA) | 30 (0.600) | 10/342 | 3.1 | NA | noncoding (763/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274486 | NA (NA) | noncoding (664/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 4332240 | 40 (0.770) | 9 (0.180) | 9/332 | 3.2 | 19.1% | coding (1033/1092 nt) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| ? | NC_000913 | = 4332672 | 39 (0.800) | coding (601/1092 nt) | basS | sensory histidine kinase in two‑component regulatory system with BasR | |||||
| * | ? | NC_000913 | = 1125266 | 39 (0.750) | 11 (0.220) | 9/334 | 3.2 | 16.7% | coding (61/1209 nt) | mdtH | multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin |
| ? | NC_000913 | = 1125612 | 73 (1.480) | coding (51/585 nt) | rimJ | ribosomal‑protein‑S5‑alanine N‑acetyltransferase | |||||
| * | ? | NC_000913 | = 2066591 | 44 (0.840) | 30 (0.600) | 9/342 | 3.3 | 41.4% | noncoding (763/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2102280 | NA (NA) | noncoding (664/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2066591 | 44 (0.840) | 30 (0.600) | 9/342 | 3.3 | 36.0% | noncoding (763/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066690 | 64 (1.270) | noncoding (664/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1097499 = | 4 (0.080) | 10 (0.200) | 9/338 | 3.3 | 64.9% | intergenic (+670/+66) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097583 = | 7 (0.140) | noncoding (70/88 nt) | serX | tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097318 = | 11 (0.210) | 10 (0.200) | 9/338 | 3.3 | 53.3% | intergenic (+489/+247) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097583 = | 7 (0.140) | noncoding (70/88 nt) | serX | tRNA‑Ser | |||||