New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2304902	NA (NA)	20 (0.140) +CTACGGGGTGGAGCACTTCACAGCGGTGTAGGC	9/130	19.2	NA	noncoding (486/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913	= 2305065	NA (NA)					noncoding (649/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
Rejected: Coverage evenness skew score above cutoff.

AAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2304855‑2304902 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTAGATGTTGGATGCGGCGTAACCGCCTTA  <  NC_000913/2305065‑2304992                                                 |||||||||||||||||||||||||||||||||                                                                           AAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGC                                                          >  1:3488474/1‑99       TCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCCGCGTCGCA                                                    >  1:2521579/1‑99         CACCCCGTAGGTCGGCTAAGGCGGTTACGCCGCATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTCATAAGACGCGCCCGCGTCGCATC                                                  >  2:1848024/1‑99              cgaAGGTTGGATAAGGCGGTTACGCCGCATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA                                             >  1:4331555/4‑99                  GGTCGGATAAGGCGGTTACGCCGCATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCG                                         >  1:4919275/1‑99                  GGTCGGATAAGGCGGTTACGCCGCATCCGACCTACGGGGTGGAGCACTTCACAGCGGTATAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCG                                         >  1:4981922/1‑99                   gttGGATAAGGCGGTTACGCCGCATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGG                                        >  2:925802/4‑99                   GTCGGATAAGGCGGTTACGCCGCATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGG                                        >  1:1351744/1‑99                    ttGGATAAGGCGGTTACGCCGCATCCAACCTACGGGGTGGAGCACTTCACCGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCCGC                                       >  2:5297719/3‑99                    TCGGATAAGGCGGTTACGCCGCATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGC                                       >  1:88596/1‑99                    TCGGATAAGGCGGTTACGCCGCATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGC                                       >  2:3852804/1‑99                    TCGGATAAGGCGGTTACGCCGCATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGC                                       >  2:2244895/1‑99                    TCGGATAAGGCGGTTACGCCGCATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGC                                       >  1:665997/1‑99                      GGATAAGGCGGTTACGCCGCATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTC                                     >  1:2407281/1‑99                       GATAAGGCGGTTACGCCGCATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCG                                    >  2:2543628/1‑99                       GATAAGGCGGTTACGCCGCATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTtg                                    >  1:1986307/1‑97                        ATAAGGCGGTTACGCCGCATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGG                                   >  1:453036/1‑99                        ATAAGGCGGTTACGCCGCATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCCTCACGCCACCGGCTGGG                                   >  2:2506862/1‑99                        ATAAGGCGGTTACGCCGCATCCAACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGG                                   >  1:2226688/1‑99                           AGGCGGTCACGCCGCATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGACG                                >  2:5344164/1‑99                                                  TACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTAGATGTCGGATGCGGCGTAAC         >  2:4818369/1‑99                                                         TGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGAGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGGTAGATGTCGGATGCGGCGTAACCGCCTTA  >  2:5353573/1‑99                                                 |||||||||||||||||||||||||||||||||                                                                           AAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2304855‑2304902 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTCGGGCGTTAGATGTTGGATGCGGCGTAACCGCCTTA  <  NC_000913/2305065‑2304992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.