Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,781,1520AG22.6% 265.3 / 23.4 148intergenic (+135/‑63)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base A (77/36);  new base G (0/33);  total (79/69)
Fisher's exact test for biased strand distribution p-value = 8.74e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 152 total aligned reads displayed.

GGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCG  >  NC_000913/3781054‑3781250
                                                                                                  |                                                                                                  
ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa                                                                                                    >  1:1137690/1‑99 (MQ=255)
ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa                                                                                                    <  1:3402509/99‑1 (MQ=255)
 tggagGGTACGGTTCCGGGCTGTAGGTTGTCCCGCACGCTGGAACGACACCGCACTCTTTTTTTCTGCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAg                                                                                                   <  2:4693388/97‑1 (MQ=25)
 gggagGGGACCGGTCGGCGCTGTATGTGCTCCCTCACTCTGAGACGACACCGCACTCTTTCGTGCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAg                                                                                                   <  2:4246046/97‑1 (MQ=38)
 gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAg                                                                                                   <  1:5611852/99‑1 (MQ=255)
  agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgg                                                                                                  >  2:860884/1‑99 (MQ=255)
  agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgg                                                                                                  <  2:1171102/99‑1 (MQ=255)
     ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTTCTTCTTCTCACCGGAGAGAACACCAGGGTGAgggta                                                                                               >  2:2029621/1‑97 (MQ=255)
      gggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaa                                                                                              >  2:3441576/1‑99 (MQ=255)
      gggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaa                                                                                              <  1:4478036/99‑1 (MQ=255)
       ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTGTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaa                                                                                             <  2:3126102/99‑1 (MQ=255)
        gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaaa                                                                                            >  1:1762667/1‑99 (MQ=255)
         aCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAg                                                                                           >  1:3265814/1‑99 (MQ=255)
          ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAgg                                                                                          <  1:2382050/99‑1 (MQ=255)
           cGTTCGTCGCTGAATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCCCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAGAGGc                                                                                         >  2:4557288/1‑99 (MQ=38)
            gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGcc                                                                                        >  1:4801087/1‑99 (MQ=255)
             ttCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCg                                                                                       >  1:3774326/1‑99 (MQ=255)
                ggCGCTGTATGTCCTCCCCCACTCTGAAACGACCCCGCCCTTTTTTTTTCCCCCCCGCCCCCCGGGGGGGGGGGCGGGGGTGGGGGGAAAAGGCCGCAc                                                                                    <  1:1014855/99‑1 (MQ=255)
                ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCAc                                                                                    >  1:883108/1‑99 (MQ=255)
                ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCAc                                                                                    >  1:5490209/1‑99 (MQ=255)
                ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCAc                                                                                    >  2:2644785/1‑99 (MQ=255)
                   gcTGTATGTACCCCCCCACTCTGAAACGACCCCGCACTCTTTTTTTCTCCCCCGCCCCCCGGGGGAGAGGGCCGGGGGGGGGGGAAAAGGCCGCACTGc                                                                                 <  2:562922/99‑1 (MQ=255)
                   gcTCTATTTACTCCCTCCCTCGGAACCGACACCGGCCTCTTTTTTCCCCCCCCGCCCCTCCGGGGGGGGGGCGGGGGGGAGGGAAAAAGGCCGCACTGc                                                                                 <  2:4134406/99‑1 (MQ=255)
                      gtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCa                                                                              >  2:271340/1‑99 (MQ=255)
                       ttggtaCCCCCTCCCTCTGAAACGACACCGCACTCTTTTTTTCCCCCCCGCCCCCCCGGGGAGAGGCCCGGGGGGAGGGGAAAAGGCCGCACTGCTCAc                                                                             <  2:4697664/96‑1 (MQ=255)
                       tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCAc                                                                             >  2:1955146/1‑99 (MQ=255)
                         tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGCGAGGGCCGGGGTGAGGGGAAAAGCCCGCACTGCTCACCa                                                                           >  2:2194339/1‑99 (MQ=255)
                         tgtaCTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCaa                                                                          >  1:970370/1‑99 (MQ=255)
                         tgtaCTCCCTCACTCTGAAACGACACCGCACACTTTTATTCTCCCACGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAGAAGGCCGCACTGCTCACCa                                                                           >  1:5009685/1‑99 (MQ=39)
                           taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAt                                                                         >  1:4645930/1‑99 (MQ=255)
                            aCTCCCCCCCGCGGAAACGCCCCCCCCCGCTTTTTTCCCCCCCCGCCCCCCCGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAAtt                                                                        <  1:4370540/99‑1 (MQ=255)
                              tCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAtttt                                                                      >  1:4440536/1‑99 (MQ=255)
                              tCCCCCACTCTGAAACGACACCGCACTTTTTTTTTCCCCCCCGCCCCGCCGGGGAGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAtttt                                                                      <  1:4573637/99‑1 (MQ=38)
                               cccGCACTGGGAAACGCCACCCCCCTCTTTTTTTCCCCCCCCCCCCCCGGGGGAGGGGGCCGGGGTGGGGGAAAAAGGCCGCACTGCTCACCAATTTTc                                                                     <  1:3411808/99‑1 (MQ=255)
                                ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttttat                                                                    >  2:4381914/1‑97 (MQ=255)
                                ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                                    >  2:2335761/1‑99 (MQ=255)
                                 cgccctccGAAACGACACCGCCCTCTTTTTTTCCCCCTCGCCCCCCGGGGGAGGGGGCCGGGGGGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTg                                                                   <  2:1350597/95‑1 (MQ=255)
                                 cTCCCTCTAAAACGCCCCCGCCCTCTTTTTTCCTCCCCCCCCCCTCCGGGAGGGGGGCCGGGTTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg                                                                   <  1:3024654/99‑1 (MQ=255)
                                 cTCACTCTGAAACGACACTGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAAAGGGCCGGGGTGAGGGGAAAAGGCCGCACTCCCCACCAATTTTCTg                                                                   >  2:2566224/1‑99 (MQ=38)
                                    cctctGAAACGACACCGCCCGTTTTTTTTCCCCCTCGCCCCCCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTa                                                                <  2:2969869/98‑1 (MQ=37)
                                    aCTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTa                                                                >  1:5297011/1‑99 (MQ=255)
                                     ctctGAAACGACACCGCACTCTTTTTTTCTTTTTCTCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTAt                                                               >  2:516197/1‑99 (MQ=255)
                                      tctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGACGGCCGGGGTGACGGCACACCGACCCACTGCTCACCCACCTTCTCCTATc                                                              >  2:2479207/1‑99 (MQ=255)
                                        tGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCCGCTATCCt                                                            >  2:4919954/1‑99 (MQ=255)
                                         gAAACGAGACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg                                                           >  2:5292929/1‑99 (MQ=255)
                                         gAAACGACACCGCACTCTTTTTTTTTTTTTTTTTTCTCCGGGGAGAGGGCCTGGGTGCGGGGAAAAGGCCTCACTGCTCACTAATTTTCTGCTATCCTg                                                           >  2:2824768/1‑99 (MQ=255)
                                          aaaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc                                                          >  2:4809657/1‑99 (MQ=255)
                                           aaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcc                                                         >  1:3518249/1‑99 (MQ=255)
                                             cGACCCCCCCCTTTTTTTTCCCCCCCCCCCCCCCGGGGGAGGGGCCCGGGGGGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                       <  1:1833320/99‑1 (MQ=255)
                                             cGACCCCCCACTCTTTTTTCCCCCCTCCCCCCCCCGGGGAGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                       <  1:5279826/99‑1 (MQ=255)
                                              gACACCGCACTCTTTTTTTTTTTTTTTTCCCTCCGGGGAGAGGGCCGGGGTGTGGGCCAAAGGCCGCACTCCTCACCAATTTTCTGCTATCCTGccccc                                                      >  2:4733322/1‑99 (MQ=255)
                                              gACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccccc                                                      >  2:1534013/1‑99 (MQ=255)
                                               acacCGCACTCTTTTTTTTTTTTTTTTCCCTCCGGGGAGAGCCCCGGGGTGAGGTCAAAAGGCCGCACTGCTCACCAATTTTCTCCTATCCTGcccccc                                                     >  2:3873695/1‑98 (MQ=255)
                                                 cccGCCCTCTTTTTTTCCCCCCCCCCCCCCGGGGGGGGGGGCGGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCa                                                   <  1:3729281/98‑1 (MQ=255)
                                                 acCGCACTCTTTTTTTTTTTTTTTCCCCTCCGGGGAGCGGCCCGGGGTGACGGCAACAGGCCGCACTGCTCACCAACTCTCCCCTATCCTCCCCCCGcc                                                   >  2:1558342/1‑98 (MQ=255)
                                                 acCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCa                                                   >  2:5472316/1‑99 (MQ=255)
                                                  ccGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                  >  1:5050946/1‑99 (MQ=255)
                                                     cACTCTTTTTTTCTACCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa                                               >  2:4203537/1‑99 (MQ=255)
                                                      cctttttttttCCCCCCCGCCCCCCGGGGAAGGGGGCGGGGGAGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                                              <  1:2183386/95‑1 (MQ=255)
                                                      cctctTTTTTCCCCCCTCCCCCCCCGGGGGCGGGGGCCGGGGTGAGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                                              <  2:2378522/98‑1 (MQ=255)
                                                       ctctTTTTTTCCCCCCCCCCCCCCGGGGGAGGGGCCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                             <  1:4878098/99‑1 (MQ=255)
                                                       atctTTTTTTCCCCCGCGCCCCCCGGGGGAGGGGCCGGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                             <  2:525205/98‑1 (MQ=255)
                                                        tctTTTTTCCCCCCTCGCCCCGCCGGGGAGGGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                            <  2:2013487/99‑1 (MQ=255)
                                                        tctTTTTTCCCCCCCCCCCCCTCCGGGGGGGGGCCGGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                            <  1:5601041/99‑1 (MQ=255)
                                                          tttttttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                                          >  2:3464970/1‑99 (MQ=255)
                                                           ttttttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc                                         >  2:1015818/1‑99 (MQ=255)
                                                            tttttCCCCCTCCCCCCCCCGGGGAGAGGGCGGGGGGGGGGGGAAAAGTCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCa                                        <  2:4999546/99‑1 (MQ=255)
                                                            ttttcCCCCCCCCCCCCCCCGGGGAGGGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCa                                        <  1:4195179/99‑1 (MQ=255)
                                                               ttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa                                     >  1:3020373/1‑99 (MQ=255)
                                                                cccccccCGCCCCCCGGGGGGGGGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                                    <  1:5557014/96‑1 (MQ=255)
                                                                 ctcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTagg                                   >  2:739884/1‑97 (MQ=255)
                                                                 ctcCCCCCCCCCTCCGGGGTGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATg                                   <  1:3996075/99‑1 (MQ=255)
                                                                 ccccccCGCCCCGCGGGGGGGGGGCCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATg                                   <  1:1039169/97‑1 (MQ=255)
                                                                  tcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                                  >  2:456773/1‑99 (MQ=255)
                                                                  cccccCGCCCCTCCGGGGGGAGGGCCGGGGGGAGGGAAAAAGGCCGCGCTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                                  <  1:2842981/98‑1 (MQ=255)
                                                                     cTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                               >  1:149222/1‑99 (MQ=255)
                                                                     cTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                               >  2:2041737/1‑99 (MQ=255)
                                                                        gCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACa                            >  1:2340804/1‑99 (MQ=255)
                                                                          cccTCGGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATc                          <  2:3797425/99‑1 (MQ=255)
                                                                           ccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg                         <  1:2437041/99‑1 (MQ=255)
                                                                            cTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                        >  1:2557119/1‑99 (MQ=255)
                                                                             tCCGGGGAGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa                       <  2:4465747/99‑1 (MQ=255)
                                                                              ccGGGGAGGGGGCCGGGGGGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTAc                      <  2:3698328/99‑1 (MQ=255)
                                                                               cGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACt                     >  2:1105586/1‑99 (MQ=255)
                                                                                 gggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACttt                   >  1:3895931/1‑99 (MQ=255)
                                                                                  ggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa                  >  2:1122167/1‑99 (MQ=255)
                                                                                   gagaGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc                 <  1:3925120/99‑1 (MQ=255)
                                                                                      ggggcgggggcggGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa              <  2:890334/98‑1 (MQ=255)
                                                                                      gggaccGGGGTCGGGGGAAAAGGCCGCACTGCTCACCAGTTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa              <  2:5137004/95‑1 (MQ=255)
                                                                                       gggCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAc             >  2:2201604/1‑99 (MQ=255)
                                                                                       gggCCGGGGGGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAc             <  2:301698/99‑1 (MQ=255)
                                                                                        ggCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc            >  1:3111359/1‑99 (MQ=255)
                                                                                        ggCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc            >  2:1355426/1‑99 (MQ=255)
                                                                                          ccGGGGAGGGGGGAAAAGGCCGCACTGCTCACCCATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg          <  2:731737/99‑1 (MQ=255)
                                                                                           cGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGa         >  2:1304303/1‑99 (MQ=255)
                                                                                           cGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGa         >  1:180109/1‑99 (MQ=255)
                                                                                              ggTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAt      <  2:83171/99‑1 (MQ=255)
                                                                                               gTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAtt     >  1:3652737/1‑99 (MQ=255)
                                                                                                tGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTc    >  1:2857847/1‑99 (MQ=255)
                                                                                                 gAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTcc   <  2:4010266/99‑1 (MQ=255)
                                                                                                  |                                                                                                  
GGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCG  >  NC_000913/3781054‑3781250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑