| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,383,722 | 0 | G | A | 28.8% | 123.0 / 34.9 | 74 | F80F (TTC→TTT) | ycjW | LacI family putative transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (44/8); new base A (0/21); total (45/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.96e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAA > NC_000913/1383499‑1383947 | cTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGaaaaa > 1:1753070/1‑229 (MQ=255)cTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGaaaa < 1:1755553/228‑1 (MQ=255)cTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCACAGaaaaa > 2:290211/1‑229 (MQ=255) aaCTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGa < 1:1376123/229‑1 (MQ=255) tGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCCACGTAAAACGGATTAcc > 2:1695181/1‑229 (MQ=255) gAATATCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGaaa > 1:735945/1‑200 (MQ=255) gAATATCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGaaa < 2:734656/200‑1 (MQ=255) atatCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGaa > 1:184616/1‑228 (MQ=255) atatCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTAACCGCCGGAGCTTTGGTCGaa > 2:1957657/1‑228 (MQ=255) tCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTTATGGCATGCTAAA‑CT‑TCAGACAAAAACGGCTTACCCGCCGTAGTTTTGGTGGAACggg > 2:1830973/1‑229 (MQ=255) tCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGCGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAC‑AT‑TCAGAGCAAAACGGATTACCCGCCTTAGTTTTGGTCGAACgg > 2:1542497/1‑228 (MQ=255) ttgacaaaaaaaTTACTACTCCGCTGGCGAACTGAGTAT‑AATAATTCCTTTAATCTTTTTCTGTTTAT‑TTTTGCTTTC‑GCTTTTTTCCATATCTTCTGCCGGTTTGTGCGTCGTTTGTAAAAACACTCAGAAACTTTCTTCTTCAGCTTTGGCGGTGATGGCATAAAAAC‑CT‑TAAGAAAAAAACGAATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATa < 2:768255/223‑1 (MQ=255) ttGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGaa > 1:1139104/1‑220 (MQ=255) ttGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATa > 1:639170/1‑229 (MQ=255) ttGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTAACCGCCGTAGGTTTGGGCGAACGGGTAGAAATCACCATa > 2:894239/1‑229 (MQ=255) ttGGGCAAAAAATGACTCATCCGCGGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTTATGGCATGCAAAA‑CT‑TCAGAGGAAAACGGATTACCCGCCGTAGGTTTGGTCGGACGGGTAGGAAACAACATa > 2:1842921/1‑229 (MQ=255) tgggaaaaaaaaGGACTCCTCCGCTGGTAACCTGATAAT‑AATATTGCTTTTAATCTTTTTCTTCTTAT‑TTTTGCTTTC‑CTTTTTTTGCATTTTTTCTGCCGGTTTGTGCGCTTTTTTTAATACCACTTCGAACCCTTTTTCTTCAGCTTGGGCGGTGATGGCAGAAAAAC‑CT‑TCAAAAAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGaa < 2:1137119/214‑1 (MQ=255) agaaaaaaaaTGCTTCATCCGCTGACGAA‑TGCGTATAAATAAGGCCTTTAATCTTTTTCTGCTTAA‑TTTTGTTTTC‑GCTTTTTTGAAGATCTTCTGCCGGATTTTGCAACGTTTGAAATATCACGCCGAAACCTTCTCTTTCAGTTTGGGCGGTGATGGCATGCAAAA‑CT‑TCAGAAAAAAACGGATCCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAAt < 2:1860130/225‑1 (MQ=255) ggCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGGAGTTTTGGTCGAAAGGGTAGAAATCACCACAAt > 1:494508/1‑228 (MQ=255) acacccccccTGGCTAATGGAGCAT‑ATTAATCTATTTAATTATTTTTTGTTTAT‑TTTTTCTTTC‑GCTTTTTTGCAGATTTTCCGCCGGTGTGTGGGGCGTTTGAAATACCACCGCAAAACCTTCTTTTTCCTTTTGGGGGGGGATGGCAGGAAAAT‑CT‑TCAAAAAAAAAGGAATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAAc < 2:393761/219‑1 (MQ=255) aTCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTTTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAAAGGATTACCCGCCGTAGCTTTGGTCGAACAGGTAGAAATACACATAATAGCATCAAAACCAGa > 2:26818/1‑228 (MQ=255) cAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGcc > 1:1425718/1‑229 (MQ=255) tGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTg > 1:1402225/1‑227 (MQ=255) ccTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACccgcc > 1:1579150/1‑150 (MQ=255) ccTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAAACCGAAGAGGGCAACGCGCGGGCCAGCTTg > 2:1551512/1‑225 (MQ=255) ttaattCATTTTC‑GTTTTA‑TTTTGTTTTCGGCTTTTTGGCATATTTTCTGCTGATTTGGTGGTCGTTGTAAATATCACTTAAAAACTTTCTTCTTCAGCTTGGGGGGTGAGGGCAGGAAAAA‑CT‑GAAAAAAAAAACGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGc < 2:1399816/224‑1 (MQ=255) ttAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCt > 1:908739/1‑229 (MQ=255) ttAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCt > 1:418514/1‑229 (MQ=255) tAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGTAAAACGGATTACCCGCCGTAGTTTTGGGCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGAGGGCCAGCTTGTTTGGCTg > 1:995258/1‑229 (MQ=255) tttCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGCGAAAAACGGATTTCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGGCAGTGCGCGGGCCATCTTGTTTGGCt > 1:1806747/1‑221 (MQ=255) ttcctgctgTA‑TTTTGCTTTG‑TCTTTTTTGCGGATCTTCGGCCGGTTGGGGCGTCGTTTGTAATACCACGTCGAAACCTTCTTCTTCGGCTTGGGCGGGGAGGGCATGAAAAA‑CT‑TAAGAAAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCt < 2:1803680/218‑1 (MQ=255) gctcTTAATTTTTGCTTCC‑ACTTTTTTGAAGCTCTTCTGGCGGATGGGGCGATGTTTGTAATAACGCGTCAAACCTTTTTTCTCCAGCTTTGGCGGTTAGGGCAGGCAAAC‑CT‑TGAGAAAAAAACGATTTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAAt < 2:1018380/160‑1 (MQ=255) cTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAAttct > 2:1417175/1‑229 (MQ=255) cTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGccc > 1:690497/1‑229 (MQ=255) tC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGGAGAAATCAACATAATGGCATCAAAACCCGAAGAGGTCAGCGGGACGGCCAGCTTGGTTGGCTGATACTGGAATTCTTCAATggtcagg > 2:1191618/1‑223 (MQ=255) gCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATAAAAACCCGAAGAGGTCAGCGCGCGGGCCCGCTTGTTTGGCTGATACTGTAATTCTTCACTGGCCCGTAac > 1:1622809/1‑229 (MQ=255) cttctGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGGAGTTTTGGTCGAACGGGTAGAAATAACCCTAATGGCCTCAAAACCCGAAAAGGTCAGCGCGCGGGGCAGCTTGTTTGGCCGATAACGTAATTTTTGAAAGGGACGGAACACTTTTTCtggcgc > 2:840979/1‑229 (MQ=255) ctGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAAc > 1:1445752/1‑117 (MQ=255) ggATTGTGAGACTTTGTTAATAGCGCGTCAAACTTTTCTGTTGCAGCTTGGGCTGTTTGGGCATG‑AAAA‑CTGACAGAAAAACAGGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCgggg < 2:1160604/229‑1 (MQ=255) tgttGGGCGGCTTTTGAAATACCACGTAAAACCCTTCTTCATCAGTTTTGGCTGTGATGGCATGAAAAA‑CT‑TCAGAAAAAACCGGATTCCCCGCTGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCgg < 2:1620049/224‑1 (MQ=255) ttGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGGGATATTAGTTTg > 1:154242/1‑228 (MQ=255) atCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGCAACTGTAATTCTTCAATGGCCCGTAACAATTTTTCGCGCGCTTCCGGGGCGGTATTAGTTTG‑CTTa > 2:1681342/1‑225 (MQ=255) caacggagataCCTTTTTGTTCAGTGTGGGCGGTGATGGTAAAGAAAA‑CT‑TCAAAAAAAAACGTATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAg < 1:252301/219‑1 (MQ=255) acACGGCGAACCCTTCTTCTTCAGTTTTGGCGGTGATGGCATACAAAA‑CT‑TCAGAGAAAACCGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAg < 1:1331537/228‑1 (MQ=255) cccctcaaaaCCTTTGTCCTCATTTTTGGCGGTTATTGAATGAAAAA‑CT‑TCAGAAAAAAACGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGc < 1:842454/222‑1 (MQ=255) cccGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCCTGCAAAA‑CC‑TCAGAGAAAAACGGACTACCCGCCGTAGTTTTGGTCGAACCGGTAGCAATCACCCTAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCCTGTTTGGCTGATACTGTAATTCTTCCATGGCCCGTAACCCTTTTTCGCGCGCTTCCGGTGAGATCTTAGATTG‑CTTTTTCac > 2:1828606/3‑227 (MQ=255) cACGACGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAATC‑CT‑TGAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATc > 1:1351010/1‑114 (MQ=255) cctgcGAAACTTTCTTCTTCATCTTTGGCGGTGGGGGCGGGAAAAA‑CT‑TCAGAGAAAAGCGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGc < 1:994422/224‑1 (MQ=255) cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCTTGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTTGTTTTGGTCGAACGGGTAGAAATCACCATAATTGCCTCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCGGGTACTGCAATTCTTCACTGGCCCCGAACCATTTTTTCCGCCGTTCCGAGTAGATATTTGTTTT‑CTTATTCAGCAc > 2:1580379/1‑229 (MQ=255) cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCCGAGAAAAACGGATTACCCCCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGGGCTCTTAGTTTG‑CTTATTCAGCAc > 1:541904/1‑229 (MQ=255) cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATTGCATCAAAACCCGAAGAGGTCAGCGCGCCGGCCAGCTTGTTTGGCTGCAACTGTAATTATTCAATGGCCCGTAACACCTTTTCGTGGGCTTCCTGGGCGGTATTAATTTGCCTTATTCacaa > 2:588419/1‑226 (MQ=255) cGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGCGATATTAGTTTG‑CTTATTCAGctc > 2:270446/1‑227 (MQ=255) aaaCCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGCAACACTTTTTCGCGCGCTTCCGGGGAGATATTAg > 1:1472093/1‑208 (MQ=255) ttttcttcGGCTGTGGGGGTGATGGCATGCAAAA‑CT‑CAAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTaa < 2:1660270/150‑1 (MQ=255) tcttcttcAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGGAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGAAACTGTaa > 1:1663102/1‑152 (MQ=255) ccgCTTGGGCGGTTATGCAAAGCAAAA‑CT‑TCAAAAAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCCCCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAg < 1:878444/193‑1 (MQ=255) cAGTTTTGGCGGTGATGGCATGAAAAA‑CT‑ACAGAAAAAAACGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGaaa < 1:1285344/78‑1 (MQ=255) cAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGaaa > 2:1283115/1‑78 (MQ=255) cAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACCCTTTTTCGCGCGCTTCCGGGGAGGTTTTAg > 2:876910/1‑195 (MQ=255) aGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGa > 1:196897/1‑225 (MQ=255) cTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGaaaa > 2:650501/1‑36 (MQ=255) cTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGaaaa < 1:651651/36‑1 (MQ=255) tttGGGGGTGATGGTATGAAAAA‑CT‑TCAGAAAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGAt < 1:270035/229‑1 (MQ=255) ggggCGGTGAT‑GCATGAAAAACCT‑GAAGAAAAAAAGGGATACCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGATa < 1:363134/227‑1 (MQ=255) gcggcgATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAAAGGGGAGAAATCACCATAATGGCATCAAAACCCGAAGAGGGCAGCGCGCGGGCCTGCTTGTTTGGc > 1:45153/1‑126 (MQ=255) ttatgaaaagCAAAC‑CT‑ACAGAAAAAAACGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTg < 1:1698082/219‑1 (MQ=255) gATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGc > 1:1249091/1‑121 (MQ=255) gATGGCAAAAAAAC‑CT‑TCAGAAAAAAACGTATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGc < 2:1246921/121‑1 (MQ=255) gtgcaaagaaaaa‑CT‑TAAAAAAAAAGGGGATCACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTg < 1:26864/217‑1 (MQ=255) tgtcatgataaa‑CT‑TCAAAAAAAACCGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAAc < 1:1834091/220‑1 (MQ=255) cAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa > 1:953971/1‑229 (MQ=255) aaaa‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 1:1419612/228‑1 (MQ=255) a‑CT‑TCAAAAAAAACCGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAatat < 1:1193695/229‑1 (MQ=255) ttaagagAAAAACGGATTCCCCGCCGGAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATc < 1:1961026/225‑1 (MQ=255) ctaagaaAAAACCGGTTTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCTCCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATc < 1:290731/225‑1 (MQ=255) tgagaaAAAACCGTGTTACCCGCCGGAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCAt < 2:493636/227‑1 (MQ=255) cAGAAAAAAAGGGATTCCCCGCCGTAGGTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATa < 1:287842/229‑1 (MQ=255) gagaAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATaa > 2:877742/1‑228 (MQ=255) | CTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGACTCATCCGCTGGCGAACTGAGCAT‑AATAATGCCTTTAATCATTTTCTGCTTAA‑TTTTGCTTTC‑GCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTTGGCGGTGATGGCATGCAAAA‑CT‑TCAGAGAAAAACGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTG‑CTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAA > NC_000913/1383499‑1383947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |