| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,895,556 | 0 | T | C | 28.4% | 142.3 / 11.5 | 67 | M352V (ATG→GTG) | adeP | adenine permease, high affinity; adenine:H+ symporter |
| Reads supporting (aligned to +/- strand): ref base T (40/8); new base C (1/18); total (41/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.68e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAGATAAAGCCCAGCGCGATACCTTCGGTAATCGAGAAGCTGAACGGCATCATCACGGCGGTAATAAACGCCGGAACAGATTCAGTAAGATCCTG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATACTGTCGACATACAGCGCCTGCTTCATGCGCGGGAATTTCCCCTT > NC_000913/3895345‑3895757 | cGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAGATAAAGCCCAGCGCGATACCTTCGGTAATCGAGAAGCTGAACGGCATCATCACGGCGGTAATAAACGCCGGAACAGAATCAGTAAGATCCTG‑CCCGTTCACGCGTGCCAGACTGG‑GAGG‑CATCAGCACGCCAACGGAAATCAGCGCACCAGCCGCAGCGT‑AGCCTGG‑CACCCTCACCCCCACCGGCGACa > 2:1804989/1‑229 (MQ=255)cGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAGATAAAGCCCAGCGCGATACCTTCGGTAATCGAGAAGCTGAACGGCATCATCACGGCGGGAATAAAACCCCGAAAAGATTCAATAAAATCCTGCCCAGTTCAC‑CCTGCCCGAACGG‑CAAG‑CATCCGCAACCCAACGCAAATTCGCCCACCCGCTGCACCGA‑AGCCTCG‑CCCCCTCcccccccactccgcc > 2:97560/1‑219 (MQ=255) gCAGACGTCCGGTACCGATTTTCATCACGCCGTAGGAGATAAAGCCCAGCGCGATACCTTCGGTAATCGAGAAGCTGAACGGCATCATCACGGCGGTAATAAACCCCGGAACAAGATCAGCAAAATCCTG‑CCAGATCACGCGTGGCCGGCTGG‑GAGG‑CATACGCACAGCAACGCAAAACAGCGCCCCAGCTGCAGACG‑AGCCTAG‑GAACACTCCCGCCCACGGCGACa > 2:248003/1‑228 (MQ=255) gCAGACCTCGTGTCCCGATTTACACAACGGATTAGGGGAAACACCCCGGGGCGGTCCCTGAGGTAAACGAGGATCTAAACGGTATCACCACGGGGTTAATAAACGCCGAAACAGATTCGGTAGGATCCTG‑CAGGTTCACGCGTGCCGGCCTGG‑AAGT‑CATCGTCACCCAAACGTAAATCAGGGCACCAGCTCCAGCGT‑ATCCTGG‑CACCATCCCCGCCAGCGGCGACa < 2:352245/228‑1 (MQ=255) cgttttaCACCACGCAGTAGGAGATAACGCCCGGCGCAATCCCTGCGGAAATCGAAAAGCGGAACGGCATCACCGGGGGGGTAATAAACGCCGGAAAAGATTCAGTAAGACCCTG‑CCATTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCAAACGTAAACCAGCGCACAAGCTGCAGCGT‑AGCCTGG‑CACCACCCCCGCCAGCGGCGACAGAAAGATAACcagcag < 2:253027/226‑1 (MQ=255) aTTTTCATCACGCAGTAGGAGATAAAGCCCAGCGCGATACCTTCGGTAATCGAGAAGCTGAACGGCATCATCACGGCGGTAATAAAAGCCGGAACAGATTCAGTAAGATCCTG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGG‑CGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAg > 1:36712/1‑216 (MQ=255) catcaCGCAGTAGGAGATAAAGCCCAGCGCGATACCTTCGGTAATCGAGAAGCTGAACGGCATCATCACGGCGGTAATAAACGCCGGAACAGATTTCGTAAGATCCTG‑CCCGTTCCCGCGTGCCAGACTGG‑AAAG‑CATCAGCACGCCAACGTAAAACAACGCACCAGCTGCCGCGG‑AGCCCGG‑CACCATCCCCCCCACCCGCGACAGAAACATAAACCGCAGGaaaca > 2:1452281/1‑225 (MQ=255) caCGCAGGAGGAGAAAAAGCGAAGCGCGATACCGTCGGTAAGCGAGAAGCTGAGCGGCATGAGCCGGGCGGAAAAAAACGACGAACAAGATACGAAAAGACCCTG‑CCAGTCCACGCGTGCAAGACGGG‑AGGT‑CATCAGCACGCCAACGAAAATAGGCACACCAGCTGCAGGGT‑AGCCGGC‑CCCCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGa < 2:76316/229‑1 (MQ=255) aGCCCAGCGCGATACCTTCGGAAATCGAGAAGCTGAACGGCATCACCACGGCGGAACTAAACCCCCGGACAAATTCCGTAAGGTCCTC‑CCCGTTCACCAGAGCCCCACTGG‑AAAA‑CAACACCACTCCACCGTAAAACACCGCACCAGCCGCCGCGG‑AGCCTGG‑CACCATCCCCGCCAGCGGAGAACGACAGAGAACCAGCAGGAACAACAGACccacacacaccaccg > 2:1125729/1‑218 (MQ=255) gccagatcgcTTCGGTAATCGAGAAGCTGACCGGCATCACCACGCCGTTACAAAACCCCGAAACAGATGCAGTAAGACCCTG‑CAAGTTCACGCGTGCCCGACGGG‑AATC‑CATCAGCCCGCCAACGAAAATCGGCGCACCAGCTGCGGCGT‑AGCCTGC‑CCCCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGCACAGCAGACCAACAACCCCTGCCGTCAGAc < 2:1959665/219‑1 (MQ=255) catcatCACGGCGGTAATAAACGCCGGAACAGATTCAGTAAGATCCTG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGa < 1:1042579/228‑1 (MQ=255) ccaacgcggcggTAATAAGCGCGGAAACAGATACAGAAAGACCCTG‑CGAGTCCACGCGGGCCAGACGGG‑AAGT‑AATCCGCACGCAAACGGAAATCAGCTCACCGGCGGCAGCGT‑GGCCTGC‑CACCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACt < 2:1948462/222‑1 (MQ=255) ccccggacaCAGCTACAGTAAGTCCCAG‑CTAGTCCACGGGTGCCAG‑CTGGTAGGT‑CGCCGCCACGCCGAGGTAAAGCAGCGCACCAGCTGCAGGGT‑GGCCTGG‑CACCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCg < 2:778546/214‑1 (MQ=255) cGGAACAGATTCAGTAAGATCCTG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACa > 1:284593/1‑122 (MQ=255) cGGAACAGATTCAGTAAGATCCTG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACa < 2:284092/122‑1 (MQ=255) cGGAACAGATTCAGTAAGATCCTG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCCACCGATACGCCGGAAGAGGACTCAATATAAACCGAAACGgaaaaa > 1:1064427/1‑229 (MQ=255) cGGAACAGATTCAGTAAGATCCTG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATCAGCCGTAACTgaagaa > 2:1244825/1‑229 (MQ=255) cGGAACAGATTCAGTAAGATCCTG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAAAAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGACAACCGATCCGc > 1:91783/1‑194 (MQ=255) aaCAGATTCAGTAAGATCCTG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGC‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGCACGACCGCCAACCGATACGCCGGAAGAGGACCCAATACAAGCCGTAACGGAAGAAGTa > 1:1681667/1‑229 (MQ=255) aTCCTG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGAc > 1:1932926/1‑187 (MQ=255) aTCCTG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCg > 1:1213237/1‑229 (MQ=255) aTCCTG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCg > 1:400978/1‑229 (MQ=255) ctccgtccAGTCCCCGCGTCCCAGCCTGA‑AAGT‑CATCCCCCCGCCACCTTAAATCAGCGCACCACCTGCCGCGT‑AGCCTGG‑CCCCCCCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACGGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGAc < 2:1929615/181‑1 (MQ=255) tG‑CCAGTTCACGCGTGCCAGTCTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAACTATAACCAGCAGGAAcagca > 1:700046/1‑124 (MQ=255) tG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGcc > 1:1881649/1‑161 (MQ=255) tG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTCACGGCAGAAGAACCGATAAACGAACCGGTCa > 2:1664964/1‑229 (MQ=255) tG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGAACCGATAAACGAACCGGTCa > 1:1321792/1‑229 (MQ=255) tG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGAACGACCGCCAACCGAAACGCCGGAAGAGGACTCAATATAAGCCgg > 1:500383/1‑196 (MQ=255) tG‑CCAGTTCACGCGTGCCAGACTGG‑AAGC‑CATCCGCACGCCAACGAAAATCAGCGCACCAGCTGCACCGT‑AACCTGG‑CACCATCCCCGCCAGCGGCAACCGAAACCTCACCAGCAGTAACAGCAGACCAACAACCACTGCCGTCAGCCCGGTCCGACCGCCACCCGAAACGCCGCAAGAGCAATCAACACAAGCCGCAACGTCGAAAGTACAGAGACACGAAcgcgtcc > 2:873272/1‑223 (MQ=255) gg‑CCGGTTCACGCGTGCCGGTCGGG‑AAGT‑AATCGGCCCGCCAACATAAATCAGCGCACGAGCTGCGGCGT‑AGCCTGG‑CACCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAAcagca < 2:698819/123‑1 (MQ=255) aGTTCACGCGGCCCGGACT‑G‑AAGTCCATAACCACGCCAAGTAAAACCAGCGCCCAAGCTGCAGCGT‑AGCCGGC‑CACCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGa < 2:444206/229‑1 (MQ=255) ttCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACt > 1:1624461/1‑178 (MQ=255) gcaaGACGGG‑AAGT‑CATCAGCGCCCCAAGGTAAATCAGCGCACCAGCTGCAGGGT‑AGCCTGG‑CCCCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATACTGt < 1:97721/226‑1 (MQ=255) ccAGACTGG‑AAGT‑CATCAGCCCGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACTACCGCCAACCGATCCGCCGGAAGAGGACCCAATATAAGCCGTCACGGCAGAAGTACAGATAAACGAACCGGTCCCCGACGAGATCATGTc > 2:939423/1‑229 (MQ=255) ccAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATACTGt > 2:1641453/1‑228 (MQ=255) ccAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATACTGTc > 1:573823/1‑229 (MQ=255) gg‑AAGT‑CACCAGCCCGCAACCGAAAACCCCCCCCCCGCCTGCAG‑GT‑GGCCCGGCCACCGCCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATACTGTCGACATa < 2:572819/228‑1 (MQ=255) g‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AACCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGa > 1:1057041/1‑158 (MQ=255) aGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGt > 1:364871/1‑117 (MQ=255) cctcgcccgcccAACGAAAAGCGCCGCACCAGCTG‑AGGGTAAGCCTGG‑CACCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATACTGTCGACATACAGCGcc < 2:596017/219‑1 (MQ=255) atcaGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGAc > 1:929755/1‑69 (MQ=255) atcaGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGa > 1:871878/1‑96 (MQ=255) atcaGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGAc > 1:1477793/1‑153 (MQ=255) atcaGCACGCCAACGAAAACCAGCGCACCAGCGGCAGCGA‑GGCCTGG‑CACCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGa < 2:870357/96‑1 (MQ=255) atcaGCACGCAAACGTAAACCAGCGCACCAGCGGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGAc < 2:928130/69‑1 (MQ=255) atcaCCACGCGAAGGAAAACCAGCGCACCAGCTGAAGGTT‑AGCCGGC‑CACCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGAc < 2:1475250/153‑1 (MQ=255) gCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAg < 2:1620793/112‑1 (MQ=255) gCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAg > 1:1623554/1‑112 (MQ=255) cAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATACTGTCGACATACAGCGCCTGCTTCATgc > 1:1279212/1‑228 (MQ=255) aaatcaagcccccAGCGGCAGCTG‑GGCCGGG‑CCCCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATACTGTCGACATACAGCGCCTGCTTCATGCGCGGGa < 1:248439/217‑1 (MQ=255) aaaTCCGCGCCCCAGCTGCAGCGT‑AGCCTGG‑CACCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATACTGTCGACATACAGCGCCTGCTTCATGCGCGGGa < 1:1808062/228‑1 (MQ=255) cAGCGCCCCAGCTGCGGCGT‑AGCCTGC‑CCCCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCAc < 2:866747/180‑1 (MQ=255) cAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGACACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCAc > 1:868260/1‑180 (MQ=255) cgcCCCAGCGGCGGCTT‑ACCCGGC‑CCCCCTCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAGCAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATAc < 2:18197/188‑1 (MQ=255) cgcACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGACAGTTAACAAGCAGGAACAGCAGa > 1:1281554/1‑73 (MQ=255) cgcACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATAc > 1:18228/1‑188 (MQ=255) cgcACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAAACGGTCACGGAAGAGATACTGGCGAAATAAACAGCCTGCTTCATTCACGGGAATTTacc > 2:1352967/1‑228 (MQ=255) ccccAGCTGCACCGT‑AGCCTGC‑CACCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATACTg < 2:220726/186‑1 (MQ=255) cACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCCACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGACGTACCGATAAACGAACCGGTCACGGAAGAGATACTGTCGACATACAGCGCCTGCTTCATGAGCGGGCATTTCCACtt > 2:476737/1‑229 (MQ=255) cACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATACTg > 1:221126/1‑188 (MQ=255) gT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATAc > 1:1969509/1‑173 (MQ=255) tGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAAcagcag > 1:515403/1‑51 (MQ=255) ggg‑CCCCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAAcagcag < 2:514492/50‑1 (MQ=255) gg‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGa > 1:1678754/1‑51 (MQ=255) gg‑CACCACCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGa < 2:1675894/51‑1 (MQ=255) aTCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATAc < 2:1167320/160‑1 (MQ=255) aTCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATAc > 1:1169355/1‑160 (MQ=255) tCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAagag < 1:1672823/98‑1 (MQ=255) tCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAagag > 2:1669974/1‑98 (MQ=255) tCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACt > 1:1693015/1‑102 (MQ=255) tCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACt < 2:1690130/102‑1 (MQ=255) tCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATACTGTCGACATACAGCGCCTGCTTc > 1:437515/1‑182 (MQ=255) | CGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAGATAAAGCCCAGCGCGATACCTTCGGTAATCGAGAAGCTGAACGGCATCATCACGGCGGTAATAAACGCCGGAACAGATTCAGTAAGATCCTG‑CCAGTTCACGCGTGCCAGACTGG‑AAGT‑CATCAGCACGCCAACGTAAATCAGCGCACCAGCTGCAGCGT‑AGCCTGG‑CACCATCCCCGCCAGCGGCGACAGAAAGATAACCAGCAGGAACAGCAGACCAACAACCACTGCCGTCAGACCGGTACGACCGCCAACCGATACGCCGGAAGAGGACTCAATATAAGCCGTAACGGAAGAAGTACCGATAAACGAACCGGTCACGGAAGAGATACTGTCGACATACAGCGCCTGCTTCATGCGCGGGAATTTCCCCTT > NC_000913/3895345‑3895757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |