mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,862,667 | 0 | G | A | 42.3% | 24.7 / 10.3 | 27 | pseudogene (937/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| * | NC_000913 | 345,328 | 0 | C | A | 37.1% | 65.4 / 12.9 | 35 | intergenic (+337/‑76) | yahL/yahM | uncharacterized protein/uncharacterized protein |
| * | NC_000913 | 2,386,862 | 0 | G | A | 36.7% | 28.2 / 21.7 | 30 | intergenic (+31/‑72) | yfbL/yfbM | putative M28A family peptidase/DUF1877 family protein |
| * | NC_000913 | 5,159 | 0 | G | A | 36.0% | 31.0 / 13.7 | 25 | intergenic (+139/‑75) | thrC/yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.0% | 80.7 / 53.5 | 58 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,224,028 | 0 | T | A | 26.5% | 79.0 / 11.6 | 34 | intergenic (+121/+251) | ycgI/minE | pseudogene/cell division topological specificity factor |
| * | NC_000913 | 635,092 | 0 | A | T | 22.2% | 120.3 / 11.6 | 45 | D95E (GAT→GAA) | ybdM | Spo0J family protein, ParB‑like nuclease domain |
| * | NC_000913 | 4,287,710 | 0 | G | A | 21.7% | 141.2 / 10.1 | 60 | intergenic (‑339/‑54) | acs/nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| Marginal new junction evidence (lowest skew 10 of 232 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2729705 = | NA (NA) | 9 (0.150) | 9/294 | 4.3 | NA | noncoding (1453/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2729892 = | NA (NA) | noncoding (1266/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 225039 | 18 (0.290) | 9 (0.150) | 9/294 | 4.3 | 33.8% | noncoding (1269/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225220 | NA (NA) | noncoding (1450/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 3463082 = | 42 (0.670) | 8 (0.130) | 8/290 | 4.6 | 14.1% | coding (159/984 nt) | gspK | general secretory pathway component, cryptic |
| ? | NC_000913 | 3463296 = | 57 (0.940) | coding (373/984 nt) | gspK | general secretory pathway component, cryptic | |||||
| * | ? | NC_000913 | = 382153 | NA (NA) | 15 (0.250) | 8/288 | 4.6 | NA | noncoding (894/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382246 | NA (NA) | noncoding (987/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 608007 = | NA (NA) | 6 (0.120) | 6/248 | 4.7 | 9.1% | noncoding (1/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 609352 = | 60 (1.160) | intergenic (+175/+107) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | = 1946538 | 73 (1.160) | 10 (0.170) | 7/284 | 4.9 | 13.4% | coding (288/603 nt) | yebB | DUF830 family protein |
| ? | NC_000913 | = 1946600 | 60 (1.010) | coding (350/603 nt) | yebB | DUF830 family protein | |||||
| * | ? | NC_000913 | 315401 = | NA (NA) | 6 (0.100) | 6/274 | 5.1 | NA | noncoding (173/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315627 = | NA (NA) | noncoding (399/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 3844457 | 62 (0.990) | 6 (0.100) | 6/278 | 5.2 | 8.4% | coding (494/1767 nt) | adeD | cryptic adenine deaminase |
| ? | NC_000913 | = 3844761 | 74 (1.270) | coding (798/1767 nt) | adeD | cryptic adenine deaminase | |||||
| * | ? | NC_000913 | 1103533 = | 32 (0.510) | 8 (0.140) | 6/278 | 5.2 | 15.4% | intergenic (‑337/‑418) | csgD/csgB | csgBAC operon transcriptional regulator/curlin nucleator protein, minor subunit in curli complex |
| ? | NC_000913 | 1103745 = | 58 (1.000) | intergenic (‑549/‑206) | csgD/csgB | csgBAC operon transcriptional regulator/curlin nucleator protein, minor subunit in curli complex | |||||
| * | ? | NC_000913 | = 4467104 | 67 (1.070) | 8 (0.130) | 6/286 | 5.3 | 11.4% | coding (143/948 nt) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor |
| ? | NC_000913 | = 4467192 | 60 (1.000) | coding (55/948 nt) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor | |||||