Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,779,245	0	A	G	47.9%	‑2.9 / 131.0	94	L1161P (CTT→CCT)	ypjA	adhesin‑like autotransporter
Reads supporting (aligned to +/- strand):  ref base A (24/25);  new base G (24/21);  total (48/46)
Fisher's exact test for biased strand distribution p-value = 6.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.03e-01
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

GGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACTGTGGGCTGACGCCGG  >  NC_000913/2779146‑2779344                                                                                                    |                                                                                                    ggCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCaa                                                                                                     <  2:1547033/100‑1 (MQ=255)  gCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAg                                                                                                    <  1:131854/100‑1 (MQ=255)    tttGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGAt                                                                                                  <  1:1383090/100‑1 (MQ=255)      tGGATTTGGGATGGGGTCCGGGTTGGGTTTGACTTCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCa                                                                                                <  2:905781/100‑1 (MQ=255)       ggATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCaa                                                                                               >  1:1432790/1‑100 (MQ=255)       ggATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCaa                                                                                               >  1:460538/1‑100 (MQ=255)        gATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAAc                                                                                              >  1:2212432/1‑100 (MQ=255)        gATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAAc                                                                                              <  2:1342678/100‑1 (MQ=255)         aTTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACg                                                                                             <  2:58739/100‑1 (MQ=255)         aTTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACg                                                                                             <  2:593764/100‑1 (MQ=255)         aTTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACg                                                                                             >  1:1580920/1‑100 (MQ=255)         aTTTGGGATGGGGTCCGGGTTGGGGCTGACATCATTGGTCAGGTTCGCGGTGCTGTTGCCGTCACTTTTCAGGGCATGCGCATAGGTCCCAAGATCAACg                                                                                             <  2:1910841/100‑1 (MQ=255)             gggATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAAc                                                                                         >  1:731894/1‑100 (MQ=255)                aTGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAAccgc                                                                                      >  2:2237144/1‑100 (MQ=255)                 tGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCACTTGCTGTTGCCGTCACTTTTCAGGACATACTAATAGGTCCCAGGATCAACGAAAccgcc                                                                                     >  1:2289228/1‑100 (MQ=255)                   gggTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCgg                                                                                   <  2:970175/100‑1 (MQ=255)                   gggTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCgg                                                                                   <  2:970218/100‑1 (MQ=255)                   gggTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCAAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCgg                                                                                   <  2:1817840/100‑1 (MQ=255)                    ggTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGt                                                                                  >  2:1161594/1‑100 (MQ=255)                     gTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTa                                                                                 >  1:1068474/1‑100 (MQ=255)                          ggttgggttTGACATCATTGGTCTGGTTCCAGTTGCTATTGCCGTCACTTTTCAGTACTAACTCATAGGGCCCAAGACCAACGAACCCGCCGGTATTGcc                                                                            <  2:1559214/100‑1 (MQ=255)                          ggttgggttTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGcc                                                                            >  1:2190111/1‑100 (MQ=255)                          ggttgggttTGACAAGATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATTCTCATCGGTCCCAGGATCAACGAAACCGCCGGTATTGcc                                                                            <  2:61661/100‑1 (MQ=255)                               ggttTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCg                                                                       >  1:672534/1‑100 (MQ=255)                               ggttTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGGATTGCCCAGCg                                                                       <  2:2404893/100‑1 (MQ=255)                                gttTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGt                                                                      >  2:1449681/1‑100 (MQ=255)                                gttTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGCCTTGCCCAGCGt                                                                      >  2:1265236/1‑100 (MQ=255)                                    gACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAAc                                                                  >  1:525509/1‑100 (MQ=255)                                    gACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAAc                                                                  >  1:150289/1‑100 (MQ=255)                                    gACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAAc                                                                  >  2:783588/1‑100 (MQ=255)                                    gACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAAc                                                                  >  1:1377992/1‑100 (MQ=255)                                     aCATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACg                                                                 <  1:1392334/100‑1 (MQ=255)                                       atcatTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGaa                                                               >  2:81552/1‑100 (MQ=255)                                        tcatTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAg                                                              <  1:273582/100‑1 (MQ=255)                                          atTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCa                                                            <  1:1661519/100‑1 (MQ=255)                                            tGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCAtc                                                          <  1:1616183/100‑1 (MQ=255)                                             ggTCAGGTTCCAGTTTCTTTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAATCCGCCCGTATTGCCCAGCGTAAACGAAGCAtcc                                                         <  2:1662169/100‑1 (MQ=255)                                              gTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCAtccc                                                        >  1:1861431/1‑100 (MQ=255)                                                 aGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCAtcccctc                                                     <  1:524153/100‑1 (MQ=255)                                                 aGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCAtcccctc                                                     <  1:558366/100‑1 (MQ=255)                                                 aGGTTCCAGTTGCTGTTGCCGTCACTTGTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGTAGCAtcccctc                                                     >  1:2332435/1‑100 (MQ=255)                                                  ggTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCAtcccctcc                                                    >  2:495267/1‑100 (MQ=255)                                                   gTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCAtcccctccc                                                   >  2:2356392/1‑100 (MQ=255)                                                    ttCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCAtcccctcccc                                                  >  2:1094292/1‑100 (MQ=255)                                                     tCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTccccc                                                 <  1:354957/100‑1 (MQ=255)                                                     tCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTccccc                                                 <  2:2001617/100‑1 (MQ=255)                                                     tCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTccccc                                                 <  1:763530/100‑1 (MQ=255)                                                       cAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCtn                                               <  1:2098362/100‑2 (MQ=255)                                                        aGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGt                                              <  2:1836702/100‑1 (MQ=255)                                                         gTTGCTGTTGCCGTCACTTTTCAGTACATGCTCTTAGGTCCCAAGATCAACGAACCCGCCGGTATTGCCCAGCGTAAACTAAGCATCGCCTCCCCCTGtt                                             <  2:49001/100‑1 (MQ=255)                                                         gTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGtt                                             <  2:2245186/100‑1 (MQ=255)                                                          ttGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGttt                                            <  1:2221253/100‑1 (MQ=255)                                                          ttGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGttt                                            <  1:1584459/100‑1 (MQ=255)                                                           tGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGtttt                                           >  1:148205/1‑100 (MQ=255)                                                           tGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGtttt                                           <  2:2123255/100‑1 (MQ=255)                                                             cTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCa                                         <  1:1153550/100‑1 (MQ=255)                                                               gTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCAcc                                       <  1:937862/100‑1 (MQ=255)                                                               gTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCAcc                                       <  1:2041841/100‑1 (MQ=255)                                                                ttGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCa                                      >  1:2259037/1‑100 (MQ=255)                                                                 tGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAg                                     <  2:1051935/100‑1 (MQ=255)                                                                 tGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAg                                     >  2:1256136/1‑100 (MQ=255)                                                                  gCCGTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGc                                    >  2:2049923/1‑100 (MQ=255)                                                                   ccGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCg                                   <  1:2145697/100‑1 (MQ=255)                                                                   ccGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCg                                   <  1:1613856/100‑1 (MQ=255)                                                                   ccGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCg                                   >  2:1643388/1‑100 (MQ=255)                                                                    cGTCACTTTTCAGGACATACTCATAGGTCCCAGAATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGt                                  >  2:2151037/1‑100 (MQ=255)                                                                     gTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTc                                 >  2:1500236/1‑100 (MQ=255)                                                                     gTCACTTTTCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTc                                 >  1:343608/1‑100 (MQ=255)                                                                         cTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATcg                             >  1:807096/1‑100 (MQ=255)                                                                          ttttCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATcgc                            >  1:203077/1‑100 (MQ=255)                                                                          ttttCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATcgc                            <  2:1160164/100‑1 (MQ=255)                                                                           tttCAGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATcgcg                           <  1:1482800/100‑1 (MQ=255)                                                                           tttCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATcgag                           >  1:389136/1‑98 (MQ=255)                                                                             tCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGcgtc                         >  2:1003564/1‑100 (MQ=255)                                                                               aGGACATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGcgtcgt                       >  1:305450/1‑100 (MQ=255)                                                                               aGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGcgtcgt                       >  1:1513864/1‑100 (MQ=255)                                                                                  aCATACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAg                    <  1:1369414/100‑1 (MQ=255)                                                                                   cATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGa                   >  1:412538/1‑100 (MQ=255)                                                                                    aTACTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGAc                  <  2:569675/100‑1 (MQ=255)                                                                                       cTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCCGACtgc               >  2:1371555/1‑99 (MQ=255)                                                                                       cTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACtgt               >  2:1939508/1‑100 (MQ=255)                                                                                       cTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACtgt               >  2:166365/1‑100 (MQ=255)                                                                                       cTCATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACtgt               >  2:1394425/1‑100 (MQ=255)                                                                                         cATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACTGTgg             >  1:416623/1‑100 (MQ=255)                                                                                         cATAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACTGTgg             <  2:879764/100‑1 (MQ=255)                                                                                         cATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACTGTgg             >  1:1424058/1‑100 (MQ=255)                                                                                         cATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACTGTgg             >  2:2033281/1‑100 (MQ=255)                                                                                         cATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACTGTgg             >  2:1654139/1‑100 (MQ=255)                                                                                           tAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACTGTGGGc           <  1:2267089/100‑1 (MQ=255)                                                                                           tAGGTCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACAGTGGGc           <  1:892179/100‑1 (MQ=255)                                                                                              gTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACTGTGGGCTGa        >  1:2264464/1‑100 (MQ=255)                                                                                               tCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACTGTGGGCTGAc       <  2:230800/100‑1 (MQ=255)                                                                                               tCCCAGGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACTGTGGGCTGAc       <  1:1221063/100‑1 (MQ=255)                                                                                                cccAATATGAACGAAACCGCCGGGAGTGCAGTGCGTAAACGAAGCATCCCCTCTCCCTGTCTTGACCAGTGTCATCGCGTCGTCAGACTGTGGGCTGACg      <  2:1431799/100‑1 (MQ=255)                                                                                                cccAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACTGTGGGCTGACg      >  1:2533792/1‑100 (MQ=255)                                                                                                    aGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACTGTGGGCTGACGCCgg  <  1:2280843/100‑1 (MQ=255)                                                                                                    aGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACTGTGGGCTGACGCCgg  <  2:1666722/100‑1 (MQ=255)                                                                                                    |                                                                                                    GGCTTTGGATTTGGGATGGGGTCCGGGTTGGGTTTGACATCATTGGTCAGGTTCCAGTTGCTGTTGCCGTCACTTTTCAGGACATACTCATAGGTCCCAAGATCAACGAAACCGCCGGTATTGCCCAGCGTAAACGAAGCATCCCCTCCCCCTGTTTTCACCAGCGTCATCGCGTCGTCAGACTGTGGGCTGACGCCGG  >  NC_000913/2779146‑2779344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑