Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,946,2460GA56.0% ‑4.1 / 310.8 242noncoding (2543/2904 nt)rrlC23S ribosomal RNA of rrnC operon
Reads supporting (aligned to +/- strand):  ref base G (54/52);  new base A (36/99);  total (91/151)
Fisher's exact test for biased strand distribution p-value = 1.59e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.43e-01
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 245 total aligned reads displayed.

GGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTG  >  NC_000913/3946147‑3946326
                                                                                                   |                                                                                
ggggATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAg                                                                                  <  2:1504317/100‑1 (MQ=34)
      aaCAGGCTGATACCGCCCAAGAGTTGATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACAACCTGGAGCTGAAGTAGGTCCCAAGGGTATg                                                                            <  1:2452751/100‑1 (MQ=16)
       aCAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATgg                                                                           >  1:531393/1‑100 (MQ=34)
       aCAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATgg                                                                           >  1:2216555/1‑100 (MQ=33)
        cAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGc                                                                          <  1:1823936/100‑1 (MQ=34)
        cAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGc                                                                          <  2:2308707/100‑1 (MQ=21)
        cAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGc                                                                          <  2:2576374/100‑1 (MQ=18)
        cAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCAGCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGc                                                                          <  2:2532598/100‑1 (MQ=255)
          ggCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTg                                                                        <  2:924472/100‑1 (MQ=33)
          ggCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTg                                                                        >  1:194036/1‑100 (MQ=34)
          ggCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTg                                                                        <  2:1117813/100‑1 (MQ=21)
          ggCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTg                                                                        <  2:1686063/100‑1 (MQ=21)
           gCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTCTGGCTGt                                                                       <  2:87830/100‑1 (MQ=16)
            cTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGtt                                                                      <  2:415544/100‑1 (MQ=34)
            cTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGtt                                                                      <  1:2164415/100‑1 (MQ=21)
              gATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCg                                                                    <  1:439017/100‑1 (MQ=34)
              gATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCg                                                                    <  1:100038/100‑1 (MQ=34)
              gATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCg                                                                    <  1:1255335/100‑1 (MQ=33)
                tACGGCCAAAGACTGCATATCGACGGCTGTGTGTGGCACCTCGATGTCGGCCCATCACATCCTGGAGCTGAAGTAGGTCCCAAACGCATGGCTGTTCGcc                                                                  <  2:946050/100‑1 (MQ=11)
                tACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGcc                                                                  <  1:1744413/100‑1 (MQ=34)
                 aCCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCa                                                                 <  2:728005/100‑1 (MQ=21)
                  ccGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCAt                                                                <  1:854882/100‑1 (MQ=33)
                  ccGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCAt                                                                <  2:1081787/100‑1 (MQ=18)
                   cGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCAtt                                                               >  2:2274635/1‑100 (MQ=33)
                   cGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCAtt                                                               >  1:1054296/1‑100 (MQ=33)
                     cccAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTa                                                             >  1:928580/1‑100 (MQ=34)
                     cccAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTa                                                             <  2:11594/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                          <  2:1218604/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                          <  1:751828/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                          <  2:1066219/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                          <  2:1649156/100‑1 (MQ=18)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                          <  2:466043/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                          <  2:1700213/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                          <  2:1855761/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                          <  2:799313/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                          <  2:2235314/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                          <  2:2430395/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                          <  2:62994/100‑1 (MQ=18)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                          <  2:621040/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                          <  2:583150/100‑1 (MQ=18)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCATGGAGCTGAAGTAGCGCCCAAAGGCATGGCTGTTCGCCATTTAAAg                                                          <  2:2345693/100‑1 (MQ=11)
                         agagTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGt                                                         <  2:1533601/100‑1 (MQ=18)
                          gagTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTg                                                        <  2:1902105/100‑1 (MQ=21)
                          gagTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTg                                                        <  2:1378910/100‑1 (MQ=21)
                          gagTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGACTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTg                                                        <  2:509376/100‑1 (MQ=255)
                           agTTCATATCGACGGCGGCGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCTCCATTTAAAGTgg                                                       <  2:1931103/100‑1 (MQ=11)
                            gTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGt                                                      >  1:1187664/1‑100 (MQ=34)
                              tCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTAc                                                    <  2:2375162/100‑1 (MQ=18)
                              tCATATCGACGGCGGCGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTAc                                                    >  1:296696/1‑100 (MQ=18)
                               cATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTAcg                                                   <  2:2106916/100‑1 (MQ=21)
                                 tatCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTAcgcg                                                 >  1:2038386/1‑100 (MQ=34)
                                 tatCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTAcgct                                                 <  2:389817/100‑2 (MQ=19)
                                    cGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAACGTGGTACGCGAGc                                              >  1:589323/1‑100 (MQ=255)
                                    cGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGc                                              >  1:1465075/1‑100 (MQ=18)
                                     gACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGACGTAGGTCCCAAAGGTATGGCTGTTCGCCATCTAAAGTGTTACGCGAGCt                                             >  1:2250338/1‑100 (MQ=11)
                                       nggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTgg                                           >  1:2102530/2‑100 (MQ=19)
                                       cggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTgg                                           <  2:2252984/100‑1 (MQ=34)
                                       cggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTgg                                           >  1:1899358/1‑100 (MQ=21)
                                       cggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTgg                                           >  1:646557/1‑100 (MQ=21)
                                       cggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTgg                                           >  1:238608/1‑100 (MQ=21)
                                        ggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTggg                                          >  1:102849/1‑100 (MQ=34)
                                        ggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTggg                                          >  1:113033/1‑100 (MQ=21)
                                        ggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTggg                                          >  1:1420774/1‑100 (MQ=18)
                                        ggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTggg                                          <  2:332829/100‑1 (MQ=18)
                                        ggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTggg                                          >  1:779307/1‑100 (MQ=18)
                                         gtggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGt                                         >  1:2359788/3‑100 (MQ=255)
                                         gcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGt                                         >  1:1150725/1‑100 (MQ=34)
                                         gcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGt                                         >  1:1577578/1‑100 (MQ=21)
                                          cggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGtt                                        >  2:1771031/1‑100 (MQ=34)
                                           ggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGttt                                       <  2:1050183/100‑1 (MQ=18)
                                            gtgtTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCCGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTa                                      >  2:24689/1‑100 (MQ=18)
                                            gtgtTTGGCACCTCGATGTCGGCTCATCACAGCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTa                                      <  2:2034388/100‑1 (MQ=21)
                                             tgtTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAg                                     >  1:450264/1‑100 (MQ=34)
                                             tgtTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAg                                     <  2:148492/100‑1 (MQ=34)
                                                  ggCACCTCGATTTCGGCTCATCACATCCTGGAGCTGAAGAAGGTCCCAAAGGCCTGGCTGTTCGCCGTTTAAAGTGGTACGCGGGCTGGGTTTAGAAcgt                                >  1:729757/1‑100 (MQ=11)
                                                    cgccTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtcg                              <  2:1363174/98‑1 (MQ=16)
                                                    cACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtcg                              >  1:212735/1‑100 (MQ=33)
                                                    cACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtcg                              <  1:187133/100‑1 (MQ=33)
                                                    cACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtcg                              <  1:810390/100‑1 (MQ=18)
                                                      ccTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTg                            <  2:1197446/100‑1 (MQ=34)
                                                      ccTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTg                            <  2:1624544/100‑1 (MQ=18)
                                                      ccTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTg                            <  2:541253/100‑1 (MQ=21)
                                                       cTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTga                           <  2:1585596/100‑1 (MQ=34)
                                                       cTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTga                           <  2:1803627/100‑1 (MQ=21)
                                                          gATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGAc                        >  1:1687784/1‑100 (MQ=34)
                                                           aTGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACa                       <  2:853833/100‑1 (MQ=18)
                                                              tCGGCTCATCACATCCTGGAGCTGAAGTAGGCCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGtt                    <  2:676864/100‑1 (MQ=18)
                                                               cGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTc                   <  2:1308203/100‑1 (MQ=33)
                                                               cGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTc                   <  2:2073361/100‑1 (MQ=21)
                                                                 gCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGGGAGCTGGGTTTAGCACGTCGTGAGACAGTTCgg                 <  2:1787273/100‑1 (MQ=255)
                                                                   tcatcaCATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTc               <  2:1963323/100‑1 (MQ=34)
                                                                     atcaCATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTccc             >  1:153906/1‑100 (MQ=34)
                                                                     atcaCATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTccc             >  2:1551873/1‑100 (MQ=34)
                                                                      tcaCATCCTGGAGCTGAAGTAGGTCCCAAGGCTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTTGGTTTAGAACTTCGTGAGACAGTTCGGTCCCt            <  2:129292/100‑1 (MQ=255)
                                                                          aTCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCt        >  1:2606459/1‑100 (MQ=21)
                                                                           tCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTg       <  2:1874258/100‑1 (MQ=21)
                                                                           gccTGGAGCGGACGTAGGGGCCACGGGTATGGCTGTTCGCCATTTAAAGTAGTACGCGGGCTGGGTTTAGAACGTCGTGCGACAGTTCGGTCCCTATCTg       <  2:827236/99‑1 (MQ=11)
                                                                            ccTGGAGCTGAAGTAGGTCCCAAGGGTATGGCGGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGAAAGTTCGGTCCCTATCTGc      >  1:2478013/1‑100 (MQ=255)
                                                                              tGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCg    <  2:1831902/100‑1 (MQ=33)
                                                                              tGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCg    <  2:559469/100‑1 (MQ=18)
                                                                                                   |                                                                                
GGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTG  >  NC_000913/3946147‑3946326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑