Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,036 IS2 (+) +5 bp intergenic (‑114/‑487) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1293036 =0 (0.000)152 (0.760) 80/198 1.9 100% intergenic (‑114/‑491) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1651548 NA (NA)noncoding (706/706 nt) IS2 repeat region
* ? NC_000913 = 12930400 (0.000)166 (0.830) 92/198 1.0 100% intergenic (‑118/‑487) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1469240 NA (NA)noncoding (1/1331 nt) IS2 repeat region

Only 100 of 166 total aligned reads displayed.

TATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1292942‑1293040
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA  <  NC_000913/1469240‑1469142
                                                                                                                                                                                                      
 ATTGGGGTGGTTTGTTGAGGTAATAATAGAGTCTTAAAGTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTA                                                                                                   <  2:4414109/100‑1
         GGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCC                                                                                           >  1:3776207/1‑100
         GGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTAGTTTGTGCCGCTAGACTGGCC                                                                                           <  1:4023200/100‑1
          GTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCC                                                                                          <  1:4039050/100‑1
          GTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCC                                                                                          >  2:111845/1‑100
            TTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCC                                                                                        <  1:4160785/100‑1
              GTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTG                                                                                      >  1:4350645/1‑100
              GTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTG                                                                                      <  1:3234458/100‑1
                TGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAA                                                                                    >  1:2097572/1‑100
                TGAGGTAATAATAGAGCCTTAAAGTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTGTTTTGGGCCGCTAGACTGGCCCCCTGAA                                                                                    <  2:3819866/100‑1
                  AGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATC                                                                                  >  1:5041448/1‑100
                   GGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCT                                                                                 >  1:2499050/1‑100
                     TAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCC                                                                               <  2:4624601/100‑1
                      AATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCn                                                                              <  2:4295230/100‑2
                        TAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGA                                                                            <  1:2581711/100‑1
                          ATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACA                                                                          >  2:1274561/1‑100
                          ATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAAAGTAAGGAATTCAAAATTATTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACA                                                                          >  2:4764365/1‑100
                            AGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAAC                                                                        <  2:2622177/100‑1
                             GAGCCTTAGATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACC                                                                       <  2:2533996/100‑1
                               GCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAA                                                                     >  1:3720174/1‑100
                               GCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAA                                                                     >  1:3874282/1‑100
                                CCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAAT                                                                    >  2:3292479/1‑100
                                 CTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATA                                                                   <  1:3957159/100‑1
                                 CTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATA                                                                   >  1:2723184/1‑100
                                  TTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATAT                                                                  >  2:2334345/1‑100
                                  TTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCACCCTGAATCTCCAGACAACCAATAT                                                                  >  2:3336636/1‑100
                                  TTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCAGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATAT                                                                  >  2:1239153/1‑100
                                      ATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACT                                                              <  1:4406119/100‑1
                                      ATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACT                                                              <  1:1971635/100‑1
                                       TTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTT                                                             <  2:2005699/100‑1
                                        TCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTA                                                            <  2:1885331/100‑1
                                         CAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAA                                                           >  1:1061311/1‑100
                                           GTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAT                                                         <  2:514728/100‑1
                                           GTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAT                                                         <  2:2692437/100‑1
                                           GTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAT                                                         >  2:4208065/1‑100
                                           GTTGTGCAAAAGCCAGGAATGTAAGGACTTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCAGAATCTCAAGACAACCAATATCACTTAAAT                                                         >  2:3509216/1‑100
                                            TTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATACCACTTAAATA                                                        <  1:3532641/100‑1
                                               TGCAATAGCCAGGAATGTAATGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTTGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGT                                                     <  1:1276582/100‑1
                                               TGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGT                                                     >  1:3246543/1‑100
                                               TGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGT                                                     >  1:3330050/1‑100
                                               TGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGT                                                     <  1:2124607/100‑1
                                                      GCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATAttg                                              <  1:2899037/100‑4
                                                      GCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTC                                              >  1:1529532/1‑100
                                                       CCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCT                                             >  2:2435056/1‑100
                                                        CAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTT                                            <  1:1295109/100‑1
                                                        CAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTT                                            <  2:3062126/100‑1
                                                        CAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTT                                            >  2:1806182/1‑100
                                                         AGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTA                                           <  1:2904697/100‑1
                                                         AGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTA                                           <  2:1507768/100‑1
                                                          GGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAA                                          <  2:4103475/100‑1
                                                          GGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAA                                          <  2:2683725/100‑1
                                                          GGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAA                                          >  1:776651/1‑100
                                                          GGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAA                                          >  1:848530/1‑100
                                                           GAATGTAAGGCATTCAAAATTGTTCTTTATTTTGTGCCGCTATACTGGCCCCCTGCATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAT                                         <  2:4875188/100‑1
                                                           GAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAT                                         <  1:302530/100‑1
                                                            AATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATA                                        <  2:680168/100‑1
                                                             ATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAC                                       <  2:858986/100‑1
                                                              TGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGACACTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACT                                      <  2:1283316/100‑1
                                                               GTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTA                                     >  1:2419324/1‑100
                                                                TAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAG                                    >  1:3912552/1‑100
                                                                TAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAG                                    <  1:1829882/100‑1
                                                                TAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAACCTCCAGACAACCAATATCACTCAAATAAGTGATAGTCTTAATACTAG                                    <  1:4609454/100‑1
                                                                TAAGGAATTCAAAAGTGTTCTTTATGTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAG                                    <  2:1331219/100‑1
                                                                 AAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGT                                   >  2:5044581/1‑100
                                                                 AAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGT                                   >  2:2184066/1‑100
                                                                  AGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTT                                  >  1:243274/1‑100
                                                                   GGAACTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTT                                 >  1:681344/1‑100
                                                                     AATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTT                               <  2:4611431/100‑1
                                                                     AATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTT                               <  2:1080724/100‑1
                                                                      ATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA                              >  1:93240/1‑100
                                                                      ATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA                              >  1:287828/1‑100
                                                                      ATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA                              <  2:1217875/100‑1
                                                                      ATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA                              >  1:605510/1‑100
                                                                       TTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAG                             <  2:2882872/100‑1
                                                                       TTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAG                             <  2:1585401/100‑1
                                                                       TTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAG                             >  1:1453917/1‑100
                                                                         CAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAC                           >  2:4549939/1‑100
                                                                         CAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAC                           <  1:4280584/100‑1
                                                                          AAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACT                          <  2:2653737/100‑1
                                                                          AAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACT                          <  2:3537617/100‑1
                                                                           AAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTCAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTGAATACTAGTTTTTAGACTA                         >  1:4578865/1‑100
                                                                            AATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAG                        <  1:3064478/100‑1
                                                                                GTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAT                    >  1:1489067/1‑100
                                                                                 TTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATT                   <  1:2594115/100‑1
                                                                                  TCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCTTTG                  >  2:1668146/1‑100
                                                                                   CTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGG                 <  1:4865093/100‑1
                                                                                   CTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGG                 >  2:1718494/1‑100
                                                                                   CTTTATTTTGTGCCGCTAGACTGGCACCCTGAATCTCCAGACAACCAATATCACGTAAAGAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGG                 <  2:4367398/100‑1
                                                                                      TATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGA              >  1:2204610/1‑100
                                                                                      TATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAGAGTCTTAATAATAGATTTTAGACTAGTCATTGGAGA              >  2:4816091/1‑100
                                                                                       ATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAA             >  1:3104580/1‑100
                                                                                        TTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAC            <  1:4779712/100‑1
                                                                                              aCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGA      >  1:2022939/2‑100
                                                                                               CCGCTCGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGAT     >  2:1624635/1‑100
                                                                                               CCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGAT     <  2:2941282/100‑1
                                                                                               CCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGAT     <  2:2458583/100‑1
                                                                                                CGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATT    >  1:1682758/1‑100
                                                                                                 GCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAGTACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTG   >  1:1087096/1‑100
                                                                                                  CTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA  >  2:3774799/1‑100
                                                                                                  CTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA  >  2:2387097/1‑100
                                                                                                                                                                                                      
TATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1292942‑1293040
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA  <  NC_000913/1469240‑1469142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.