New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4296054389 (1.940)23 (0.190)
+CTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGC		 9/118 13.6 11.2% noncoding (220/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
?NC_000913 = 4628779 222 (1.110)noncoding (85/150 nt) RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4295974‑4296054
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAGGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTG  <  NC_000913/4628779‑4628739
                                                                                 ||||||||||||||||||||||||||||||||||||||||                                         
ATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAAT                                                                <  2:3556261/100‑1
                                      CGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACG                          >  2:2302806/1‑100
                                          ATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGc                      >  2:1885132/1‑99
                                                 AGGTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTC               >  1:4873636/1‑100
                                                  GGTCGGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCG              >  1:4432471/1‑100
                                                  GGTCGGATAAGGCGTTTATGCCGCATCCGACATACAAAATCACGCTAAATCAGGATATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCG              >  1:3068161/1‑100
                                                  GGTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCG              >  1:3701150/1‑100
                                                  GGTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCG              >  2:1832798/1‑100
                                                  GGTCGGATAAGGCGTGTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCG              >  2:3867125/1‑100
                                                   GTCGGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGC             >  1:1954079/1‑100
                                                      GGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGCATC          >  2:2549071/1‑100
                                                      GGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGCATC          >  2:2548574/1‑100
                                                      GGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGCATC          >  2:1912116/1‑100
                                                      GGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATC          >  1:2698294/1‑100
                                                      GGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATC          >  2:3528905/1‑100
                                                      GGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATC          >  2:1349891/1‑100
                                                      GGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATC          >  1:558891/1‑100
                                                      GGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATC          >  1:3809652/1‑100
                                                      GGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACCCGTTAAGCGTCGCATC          >  2:4168930/1‑100
                                                       GATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATCA         >  1:587154/1‑100
                                                         TAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG       >  1:425021/1‑100
                                                         TAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATCAGG       >  2:2460812/1‑100
                                                         TAAGGCGGTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATCAGG       <  2:2378627/100‑1
                                                              CGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTCTTGCGCTGTCTGGCGTAGGCCTGATAAAACCCCTTAAGCGTCGCATCAGGCgctg  >  1:4269656/1‑96
                                                                                 ||||||||||||||||||||||||||||||||||||||||                                         
ATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4295974‑4296054
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAGGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTG  <  NC_000913/4628779‑4628739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.