New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2894874NA (NA)23 (0.190)
+GCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG
9/118 13.6 9.0% noncoding (67/67 nt) REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 4296054 389 (1.940)noncoding (220/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 220 total aligned reads displayed.

GATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAG  >  NC_000913/2894775‑2894973
                                                                                                   |                                                                                                   
gATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTAc                                                                                                     >  2:2682566/1‑100 (MQ=255)
 aTAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACa                                                                                                    <  2:2159981/100‑1 (MQ=255)
 aTAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACa                                                                                                    <  1:1928696/100‑1 (MQ=255)
  tAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACaa                                                                                                   <  2:1413744/100‑1 (MQ=255)
   aaTCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAg                                                                                                  <  2:4555700/100‑1 (MQ=255)
    aTCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGt                                                                                                 >  1:4036395/1‑100 (MQ=255)
       gTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTccc                                                                                              >  1:2672506/1‑100 (MQ=255)
       gTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTccc                                                                                              <  1:2035428/100‑1 (MQ=255)
        tAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTcccc                                                                                             <  2:1663406/100‑1 (MQ=255)
         aaCCAATTGAATGTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACCCGTCTTATCAGTCCGACAAGTCGCCa                                                                                            >  2:4827442/1‑100 (MQ=37)
          aCCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAg                                                                                           <  1:3520462/100‑1 (MQ=255)
           ccAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAgg                                                                                          <  2:2536499/100‑1 (MQ=255)
            cAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGc                                                                                         >  1:1355137/1‑100 (MQ=255)
             gatctaaTTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGcc                                                                                        <  2:181786/95‑1 (MQ=255)
             aaTTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGcc                                                                                        >  2:3650789/1‑100 (MQ=255)
             aaTTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGcc                                                                                        <  2:3244934/100‑1 (MQ=255)
             aaTTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGcc                                                                                        <  1:1023787/100‑1 (MQ=255)
             aaTTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGcc                                                                                        >  1:1745168/1‑100 (MQ=255)
             aaTTGAATTTGGTTTAATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGcc                                                                                        >  2:4941451/1‑100 (MQ=255)
                  aaTTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGatc                                                                                   >  1:184062/1‑98 (MQ=255)
                  aaTTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAAc                                                                                   <  1:307213/100‑1 (MQ=255)
                  aaTTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAAc                                                                                   <  1:3461859/100‑1 (MQ=255)
                  aaTTTGGTTTGATTTGTAAGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAAc                                                                                   <  2:3869841/100‑1 (MQ=255)
                   aTTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAAcc                                                                                  <  2:3026393/100‑1 (MQ=255)
                       ggTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAg                                                                              <  2:745649/100‑1 (MQ=255)
                       ggTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAg                                                                              >  1:2952088/1‑100 (MQ=255)
                       ggTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAg                                                                              <  1:2326868/100‑1 (MQ=255)
                        gTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAgg                                                                             >  2:795165/1‑100 (MQ=255)
                         tttGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGc                                                                            >  1:147192/1‑100 (MQ=255)
                         tttGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGc                                                                            >  1:1792310/1‑100 (MQ=255)
                          ttGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCa                                                                           <  1:1874975/100‑1 (MQ=255)
                           tGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAg                                                                          <  1:3690997/100‑1 (MQ=255)
                                  tAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGatcatc                                                                   >  2:2649973/1‑100 (MQ=255)
                                   aGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATcc                                                                  >  1:4832880/1‑100 (MQ=255)
                                      ccGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGc                                                               <  2:3326026/100‑1 (MQ=255)
                                      ccGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGc                                                               >  1:140290/1‑100 (MQ=255)
                                      ccGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCACGCCAGAACCGTAGGCAGGATCATCCGGc                                                               >  2:2507494/1‑100 (MQ=255)
                                       cGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCa                                                              <  2:3459830/100‑1 (MQ=255)
                                            gCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACg                                                         >  1:4439961/1‑100 (MQ=255)
                                            gCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACg                                                         >  2:3774738/1‑100 (MQ=255)
                                             ccACTTCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGt                                                        <  2:5004089/100‑1 (MQ=255)
                                                 ntCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTAtt                                                    >  1:2128220/2‑100 (MQ=255)
                                                  tCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTg                                                   >  2:3132794/1‑100 (MQ=255)
                                                  tCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTg                                                   <  1:3851711/100‑1 (MQ=255)
                                                    ctaCAATCAGCACCTGCTGCGGCTCTTTATGCGTCTTATCAGGCGCACAAGTCCCCAGGCCAGCACCAAAGGCTAGATCATCCGGCAACACGTTATTGGc                                                 <  2:566191/98‑1 (MQ=255)
                                                    cGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGc                                                 <  2:4002956/100‑1 (MQ=255)
                                                    cGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGc                                                 <  1:2892531/100‑1 (MQ=255)
                                                    cGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGc                                                 <  1:455896/100‑1 (MQ=255)
                                                    cGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGc                                                 >  1:3809026/1‑100 (MQ=255)
                                                     gACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCa                                                <  1:3999625/100‑1 (MQ=255)
                                                       cATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAAt                                              >  2:4439148/1‑100 (MQ=255)
                                                         ttCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCt                                            >  1:2992377/1‑100 (MQ=255)
                                                          tCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTg                                           >  1:41602/1‑100 (MQ=255)
                                                          tCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTg                                           >  2:4219591/1‑100 (MQ=255)
                                                            aGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCg                                         >  2:4192317/1‑100 (MQ=255)
                                                             gcgcCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGt                                        <  1:1651435/100‑1 (MQ=255)
                                                             gcgcCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGCCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGt                                        <  2:3758648/100‑1 (MQ=255)
                                                             gcgcCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAAGCCCCAGGCCAGAACCGTAGGCAGGGTCATCCGGCAACACGTTATTGGCAATCTGCGt                                        <  2:1291482/100‑1 (MQ=255)
                                                              cgcCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTg                                       <  2:750294/100‑1 (MQ=255)
                                                              cgcCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTg                                       <  1:596389/100‑1 (MQ=255)
                                                               gcCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGa                                      >  1:2837998/1‑100 (MQ=255)
                                                                 cTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAAt                                    <  1:74504/100‑1 (MQ=255)
                                                                  tGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATg                                   >  1:4846696/1‑100 (MQ=255)
                                                                   gATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGGTCATCCGGCAACACGTTATTGGCAATCGGCGTGAATGt                                  >  2:2381794/1‑100 (MQ=255)
                                                                   gATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGt                                  >  1:954372/1‑100 (MQ=255)
                                                                     taagACGCGTCAAGCGTCGCATCAGGCCTACAAGTCCCCAGGCCAGAACCCTAGGCAGGACCACCCGGCAACACGCTATTGGCAACCTGCCTGAATGttt                                >  2:223703/4‑100 (MQ=21)
                                                                     tGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGttt                                <  1:1181531/100‑1 (MQ=255)
                                                                      gCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTg                               <  2:2054517/100‑1 (MQ=255)
                                                                      gCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTg                               <  2:4910111/100‑1 (MQ=255)
                                                                      gCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTg                               <  2:3695961/100‑1 (MQ=255)
                                                                      gCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTg                               >  1:5075656/1‑100 (MQ=255)
                                                                        gACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTc                             <  2:2015770/100‑1 (MQ=255)
                                                                         aCGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCa                            <  1:1992308/100‑1 (MQ=255)
                                                                          cGCTTGACGCGTCTTATCAGGCCGACAAGTCCCCAGGCCAGATCTGTAGGCAGGATCATCTGGCATCACGTTATTGGCAATCTGCGTGAATGTCTGTCAc                           <  2:1054608/100‑1 (MQ=38)
                                                                          cGCTTGACCCGGGTTATTAGGCCTACAAGGCCCCAGGCCAGAACCGTAGGCAAGATCATTCGGCAACTCGTTTTTGGTAATCTCCGTAAATGTTTGtatt                           <  2:1894310/100‑4 (MQ=255)
                                                                           gCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCAcc                          <  1:2549918/100‑1 (MQ=255)
                                                                            cTTGACGCGTCTTATCAGGCCTACATGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCa                         <  1:319447/100‑1 (MQ=255)
                                                                            cTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCAcag                         <  1:3296429/100‑3 (MQ=255)
                                                                              tGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGt                       >  1:2782084/1‑100 (MQ=255)
                                                                              tGACGCGGCTTATCAGGACTACAAGTCCCTAGGCCAGAACCGAAGGCAGGATCGACTGGCAACACGTAATTGGCAATCTGCGTGAATCGTTGTCAACAga                       >  2:4027160/1‑99 (MQ=255)
                                                                               gACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTg                      >  2:2930728/1‑100 (MQ=255)
                                                                                 cgcgTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTATGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGcc                    >  2:4836151/1‑100 (MQ=255)
                                                                                 cgcgTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGcc                    >  1:4330982/1‑100 (MQ=255)
                                                                                  gcgTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGccn                   <  1:365034/100‑2 (MQ=255)
                                                                                  gcgTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCt                   <  1:2410071/100‑1 (MQ=255)
                                                                                    gTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTcc                 <  1:918429/100‑1 (MQ=255)
                                                                                      cTTATCAGGCCTACAAGGCCCCAGGCGAGAACCGGAGGCAGGATCATCCGGCAACACTTGATTGGCAAGCTGCGTGAAGGTTTGTCACCAGTGCCTCCAg               >  2:3840371/1‑100 (MQ=255)
                                                                                       ttATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGc              <  1:3572480/100‑1 (MQ=255)
                                                                                        tATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGACAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGca             >  2:4612560/1‑100 (MQ=255)
                                                                                        tATCAGGCCTACAGTCCCCAGGCCATAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCTTCCAGcac            <  2:1759036/100‑1 (MQ=255)
                                                                                         aTCAGGCCTACAAGTCCCCAGGCCAGCACCGTAGGCAAGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGcac            <  2:719849/100‑1 (MQ=255)
                                                                                         aTCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGcac            >  1:5143481/1‑100 (MQ=255)
                                                                                         aTCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGcac            <  2:3973778/100‑1 (MQ=255)
                                                                                            aGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGcaccac         <  1:1299242/100‑1 (MQ=255)
                                                                                             ggCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACt        >  2:2814296/1‑100 (MQ=255)
                                                                                                 tACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTcc    <  1:2702249/100‑1 (MQ=255)
                                                                                                 tACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTcc    >  1:564134/1‑100 (MQ=255)
                                                                                                 tACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTcc    <  2:191067/100‑1 (MQ=255)
                                                                                                  ncAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCa   >  1:5132507/2‑100 (MQ=255)
                                                                                                   cAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAg  <  1:5015641/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GATAATCGTAACCAATTGAATTTGGTTTGATTTGTAGGCCGCACGCCACATCCGACATTCAGCGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCCCCAGGCCAGAACCGTAGGCAGGATCATCCGGCAACACGTTATTGGCAATCTGCGTGAATGTTTGTCACCAGTGCCTCCAGCACCACTTTCCAG  >  NC_000913/2894775‑2894973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.