BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1468681	NA (NA)	140 (1.260) +ACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGG	13/110	10.5	NA	noncoding (560/1331 nt)	IS2	repeat region
*	?	NC_000913	1650843 =	NA (NA)	140 (1.260) +ACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGG	13/110	10.5	NA	noncoding (1/706 nt)	IS2	repeat region
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 173 total aligned reads displayed.

AGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTG  >  NC_000913/1650745‑1650941

tgTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTa                                                                                                   <  1:3007574/99‑1 (MQ=255)

aGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTa                                                                                                   <  1:3084707/100‑1 (MQ=255)

 gTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTaa                                                                                                  >  2:2973850/1‑99 (MQ=255)

 gTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTAt                                                                                                  >  2:962066/1‑100 (MQ=255)

 gTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTAt                                                                                                  >  1:2761668/1‑100 (MQ=255)

  tACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATg                                                                                                 <  2:4115406/100‑1 (MQ=255)

     acTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgc                                                                                              >  2:331534/1‑100 (MQ=255)

     acTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgc                                                                                              >  1:1545101/1‑100 (MQ=255)

     acTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgc                                                                                              >  2:2191402/1‑100 (MQ=255)

      cagAAAATTCAACAGGAATAAGCAGCCCGGTCATTGCTGCCATTCATCGCGAATAGAAGCAGACATGGAAAACACTGGATGACGAACCGGCCTATGGgcg                                                                                             <  1:5154705/98‑1 (MQ=255)

      cTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgcg                                                                                             <  2:3404371/100‑1 (MQ=255)

        gAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCgct                                                                                           <  2:2692145/100‑1 (MQ=255)

        gAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCgct                                                                                           <  1:4408106/100‑1 (MQ=255)

        gAAAATTAACCAGAAACAATCAGCCCGGTCATTGCTGCCATTAATCGAGCATACAAGAAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCgct                                                                                           <  2:490292/100‑1 (MQ=255)

        gAAAATTAAACAGAAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGATAACACTGGATGACGAACTGGCCTATGGGCgct                                                                                           <  2:4566353/100‑1 (MQ=255)

           aaTTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCgctgct                                                                                        <  1:731359/100‑1 (MQ=255)

             ttCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTc                                                                                      >  1:3925866/1‑100 (MQ=255)

               cAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGc                                                                                    <  1:910810/100‑1 (MQ=255)

               cAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGc                                                                                    <  2:405436/100‑1 (MQ=255)

                aaCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCa                                                                                   >  1:3361956/1‑100 (MQ=255)

                 aCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAg                                                                                  <  1:246569/100‑1 (MQ=255)

                 aCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAg                                                                                  <  1:1476856/100‑1 (MQ=255)

                 aCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAg                                                                                  >  2:142988/1‑100 (MQ=255)

                  cAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGa                                                                                 >  2:3867277/1‑100 (MQ=255)

                  cAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGa                                                                                 >  2:1873514/1‑100 (MQ=255)

                    ggAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACa                                                                               >  2:1379169/1‑100 (MQ=255)

                    ggAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACa                                                                               >  2:4073852/1‑100 (MQ=255)

                    ggAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACa                                                                               >  1:2656377/1‑100 (MQ=255)

                     gAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAg                                                                              >  2:3770612/1‑100 (MQ=255)

                     gAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAg                                                                              <  1:648895/100‑1 (MQ=255)

                       aaaaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGc                                                                            >  1:3440636/1‑100 (MQ=255)

                       aaaaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGc                                                                            <  2:3346531/100‑1 (MQ=255)

                            cAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAAc                                                                       <  2:287902/100‑1 (MQ=255)

                             aGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACt                                                                      >  2:4458500/1‑100 (MQ=255)

                              gCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACtt                                                                     <  1:4185627/100‑1 (MQ=255)

                              gCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACtt                                                                     >  2:1531821/1‑100 (MQ=255)

                              gCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACtt                                                                     <  1:1867219/100‑1 (MQ=255)

                              gCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACtt                                                                     <  1:1759015/100‑1 (MQ=255)

                              gCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACtt                                                                     >  2:3585211/1‑100 (MQ=255)

                               cccGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTg                                                                    >  1:1592972/1‑100 (MQ=255)

                                 cGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGAt                                                                  <  1:5146616/100‑1 (MQ=255)

                                 cGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGAAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGAt                                                                  <  1:4774476/100‑1 (MQ=255)

                                  ggTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATg                                                                 <  2:2145321/100‑1 (MQ=255)

                                   gTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATgg                                                                <  2:2349320/100‑1 (MQ=255)

                                     cATTGCTGCCATTCATCGCGAATACAACCAGACATGGAAAACACTGGATGACGATCTGGCCTATGGGCGATGCTTCGCAGACAGGCAGAACTTGATGGTa                                                              <  1:4479198/100‑1 (MQ=38)

                                      aTTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTAt                                                             >  1:548120/1‑100 (MQ=255)

                                          ctgcCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCt                                                         >  1:4903146/1‑100 (MQ=255)

                                            gcCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGc                                                       <  2:2527997/100‑1 (MQ=255)

                                            gcCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGc                                                       <  2:2139743/100‑1 (MQ=255)

                                              cATTCATCGCGAATACAAGCCGACATGGCCAACACTGGATCACGCACTGACCTCTGGACGCTGCTTCGCAGAAACGCAGAACTTGATGGTACGACTGCgc                                                     >  2:4786889/1‑99 (MQ=21)

                                              cATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGa                                                     >  2:4325606/1‑100 (MQ=255)

                                                ttCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATc                                                   <  2:4291973/100‑1 (MQ=255)

                                                  cATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCaa                                                 >  1:3041/1‑100 (MQ=255)

                                                    tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATg                                               <  1:2218016/100‑1 (MQ=255)

                                                    tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATg                                               >  2:3080217/1‑100 (MQ=255)

                                                    tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATg                                               <  1:3565543/100‑1 (MQ=255)

                                                    tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATg                                               <  1:2404927/100‑1 (MQ=255)

                                                     cgcgAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGc                                              >  2:1158582/1‑100 (MQ=255)

                                                     cgcgAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGc                                              <  1:1810735/100‑1 (MQ=255)

                                                     cgcgAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGc                                              >  2:1988183/1‑100 (MQ=255)

                                                      gcgAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGcc                                             <  2:242960/100‑1 (MQ=255)

                                                        gAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAAtagatc                                           >  2:3612194/1‑95 (MQ=255)

                                                          aTACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAAc                                         >  1:2904893/1‑100 (MQ=255)

                                                            aCAAGCAGACATGGAAAACACCGGATGACGAACAGGCCTTCGGGCGCCGCTTCGCAGACAGGCAGAACTTGATGGTTTGCCTCCGGACAATGCCACACgt                                       >  2:653840/1‑100 (MQ=18)

                                                             cAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtg                                      >  1:3866943/1‑100 (MQ=255)

                                                             cAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtg                                      >  2:4631054/1‑100 (MQ=255)

                                                             cAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtg                                      >  2:3945419/1‑100 (MQ=255)

                                                             cAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtg                                      >  2:1347956/1‑100 (MQ=255)

                                                              aaGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtgt                                     <  2:2850777/100‑1 (MQ=255)

                                                               aGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGAAAAGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGtt                                    >  2:3773425/1‑100 (MQ=255)

                                                                gCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGttt                                   <  2:5045774/100‑1 (MQ=255)

                                                                gCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGttt                                   >  2:3561717/1‑100 (MQ=255)

                                                                   gACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTAcc                                >  1:2930915/1‑100 (MQ=255)

                                                                   gACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTAcc                                <  2:725683/100‑1 (MQ=255)

                                                                     cATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGGACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCgg                              >  1:4569689/1‑100 (MQ=255)

                                                                     cATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCgg                              >  1:1958474/1‑100 (MQ=255)

                                                                        ggAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATc                           >  1:25656/1‑100 (MQ=255)

                                                                        ggAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATc                           >  1:2134431/1‑100 (MQ=255)

                                                                         gAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGGTTACCGGAtta                          <  2:4705831/100‑3 (MQ=255)

                                                                          aaaaCACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCAt                         >  1:2179931/1‑100 (MQ=255)

                                                                               acTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGcc                    <  1:977578/100‑1 (MQ=255)

                                                                                 tGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAg                  <  1:1042186/100‑1 (MQ=255)

                                                                                  ggATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGa                 <  1:3749259/100‑1 (MQ=255)

                                                                                    aTGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAAt               <  1:1400229/100‑1 (MQ=255)

                                                                                      gACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgc             <  1:3624851/100‑1 (MQ=255)

                                                                                       aCGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgcg            >  1:2283812/1‑100 (MQ=255)

                                                                                        ngAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgcgc           >  1:942335/2‑100 (MQ=255)

                                                                                        cGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgcgc           >  2:2295397/1‑100 (MQ=255)

                                                                                         gAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCt          <  2:1526168/100‑1 (MQ=40)

                                                                                           aCTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGt        >  1:2079991/1‑100 (MQ=38)

                                                                                             tGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCCATGACAACCGTGTTTCCAGGCTCCTGCGCACGCCTGCGCTGTTg      >  1:5165298/1‑100 (MQ=11)

                                                                                             tGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTg      <  1:1553686/100‑1 (MQ=35)

                                                                                              ggCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGc     >  2:1261202/1‑100 (MQ=34)

                                                                                              ggCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGc     >  1:4266168/1‑100 (MQ=34)

                                                                                              ggCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCACCAGAATGCGCTGTTGc     >  1:1207290/1‑100 (MQ=21)

                                                                                               gCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCt    <  2:3788235/100‑1 (MQ=33)

                                                                                                ccTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTATCGGATCATGCGCCAGAATGCGCTGTTGCtt   >  1:4764695/1‑100 (MQ=17)

                                                                                                ccTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCtt   >  1:4003150/1‑100 (MQ=32)

                                                                                                 cTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCttn  <  1:2055018/100‑2 (MQ=14)

                                                                                                 cTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTg  <  2:1907146/100‑1 (MQ=31)

AGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTG  >  NC_000913/1650745‑1650941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.