Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,946,2460GA39.2% 236.4 / 266.4 247noncoding (2543/2904 nt)rrlC23S ribosomal RNA of rrnC operon
Reads supporting (aligned to +/- strand):  ref base G (85/64);  new base A (27/69);  total (112/135)
Fisher's exact test for biased strand distribution p-value = 1.26e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.07e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 258 total aligned reads displayed.

GGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGG  >  NC_000913/3946147‑3946327
                                                                                                   |                                                                                 
  ggATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAggg                                                                                 <  1:270797/100‑1 (MQ=34)
  ggATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAggg                                                                                 <  2:4215446/100‑1 (MQ=34)
    aTAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTa                                                                               <  1:3854198/100‑1 (MQ=34)
     tAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTAt                                                                              <  2:3577659/100‑1 (MQ=34)
     tAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTAt                                                                              <  1:86007/100‑1 (MQ=34)
        cAGGCTGATACCGCGCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGc                                                                           <  2:4640509/100‑1 (MQ=21)
        cAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGc                                                                           <  1:4713611/100‑1 (MQ=33)
          ggCTGATACCGCCTAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTg                                                                         <  2:3972328/100‑1 (MQ=255)
          ggCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTg                                                                         >  1:240477/1‑100 (MQ=33)
          ggCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTg                                                                         <  2:1085940/100‑1 (MQ=18)
           gCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGt                                                                        >  1:4424889/1‑100 (MQ=34)
              gATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCg                                                                     <  2:1288792/100‑1 (MQ=34)
              gATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCg                                                                     >  2:2186499/1‑100 (MQ=34)
               aTACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGc                                                                    >  1:3103696/1‑100 (MQ=34)
                tACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGcc                                                                   >  1:595771/1‑100 (MQ=34)
                tACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGcc                                                                   >  1:128720/1‑100 (MQ=34)
                 aCCGGCCAAGAGTTCATATCGACGGCGGTGTTTTGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCa                                                                  <  2:3636320/100‑1 (MQ=255)
                 aCCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCa                                                                  <  1:4827820/100‑1 (MQ=34)
                 aCCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCa                                                                  <  2:196679/100‑1 (MQ=21)
                     cccAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCAtttn                                                              <  1:4102961/100‑2 (MQ=21)
                       cAAGAGTTCATATCGAGGGCGGTGTTTGGAACCTAGTTGTTGTCTCATCAAAACCTGGAGCTGAGGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTaaa                                                            <  2:1886515/100‑1 (MQ=11)
                       cAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTaaa                                                            >  1:3918080/1‑100 (MQ=34)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                           <  2:2600466/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                           <  1:2835324/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                           <  2:3673602/100‑1 (MQ=18)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                           <  2:3840339/100‑1 (MQ=18)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                           <  2:2160255/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAg                                                           <  2:2728252/100‑1 (MQ=21)
                        aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGACGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTGCGCCATTTAAAg                                                           <  2:4892208/100‑1 (MQ=11)
                         tgagTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGt                                                          <  1:3564378/99‑1 (MQ=21)
                          gagTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCTCATCCTGGAGCTGAAGTACGTCCCAAAGGTATGGCTGTTCGCTATTTAAAGTg                                                         <  2:4683364/100‑1 (MQ=11)
                          gagTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTg                                                         >  2:1493355/1‑100 (MQ=34)
                           agTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTgg                                                        <  2:2708325/100‑1 (MQ=21)
                             ttCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTa                                                      <  1:2129577/100‑1 (MQ=34)
                             ttCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTAAAGTAGGACACAAGGGTATGGCTGTTCGCCATTTAAAGTGGTa                                                      <  2:1580248/100‑1 (MQ=255)
                              tCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTAc                                                     <  2:2811785/100‑1 (MQ=18)
                              tCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTAc                                                     <  2:4774208/100‑1 (MQ=21)
                                 tatCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTAcgcg                                                  >  2:734520/1‑100 (MQ=34)
                                 tatCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTAcgcg                                                  <  2:3101681/100‑1 (MQ=21)
                                 tatCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCAAAGGGTATGGCTGTTCGCCATTTAAAGTGGTAcgcg                                                  >  1:4858546/1‑100 (MQ=21)
                                  atCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCAGTTAAAGTGGGACGCGa                                                 >  2:4367556/1‑100 (MQ=16)
                                     gACGGCGGTGTTTGGCACCTCGCTGTCGGCTCATCACATCCTGGAGATGTAGTAGGTCCCCAGGGTATGGCCGTTCGCCATCTAAAGTGGTACGCGCGCt                                              >  2:1923874/1‑100 (MQ=11)
                                     gACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCt                                              >  1:1305297/1‑100 (MQ=18)
                                      aCGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTg                                             >  1:4735028/1‑100 (MQ=18)
                                       cggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTgg                                            >  1:1531472/1‑100 (MQ=34)
                                       cggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTgg                                            >  2:4535386/1‑100 (MQ=34)
                                       cggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTgg                                            >  1:1178921/1‑100 (MQ=18)
                                        ggcggTGTTTGGCGCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTGCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTggg                                           <  2:321505/100‑1 (MQ=255)
                                        ggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTggg                                           <  2:3897427/100‑1 (MQ=33)
                                        ggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTggg                                           >  1:5045457/1‑100 (MQ=21)
                                        ggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTggg                                           >  1:400813/1‑100 (MQ=21)
                                         gcggTGTTTGGGACCTCGATGTCGGCTCATGACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAGAGTGGTACGCGAGCTGGGt                                          <  2:696854/100‑1 (MQ=255)
                                         gcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGt                                          <  2:2656521/100‑1 (MQ=34)
                                          cggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGtt                                         >  2:2994772/1‑100 (MQ=33)
                                           ggtggtTGGGACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGAttt                                        <  2:4667875/100‑1 (MQ=255)
                                             tgtTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTATGTCCCATGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCTAGCGGGGTTTAg                                      >  2:3064191/1‑100 (MQ=11)
                                              gtTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGa                                     >  1:4933191/1‑100 (MQ=33)
                                              gtTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGa                                     >  2:2868939/1‑100 (MQ=34)
                                               tttGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGaa                                    >  2:1655019/1‑100 (MQ=33)
                                                ttGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAc                                   <  1:1720954/100‑1 (MQ=33)
                                                ttGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAc                                   <  2:413238/100‑1 (MQ=21)
                                                   gCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtc                                >  2:4454505/1‑100 (MQ=34)
                                                    cACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtcg                               >  2:953897/1‑100 (MQ=34)
                                                    cACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtcg                               <  2:3019414/100‑1 (MQ=21)
                                                      ccTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCAGTTAAAGTGGTACGCGAGCCGGGTTTAGAACGTCGTg                             >  2:2496339/1‑100 (MQ=255)
                                                      catCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATCGCTGTTCGCCATTTAAAGTGATACGCGAGCTGGGTTTAGAACGTCGTg                             <  2:5055961/98‑1 (MQ=255)
                                                       cTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTga                            >  1:2207736/1‑100 (MQ=34)
                                                        tCGATGTCGGCTCATCACATCCTTGAGCTGAAGTAAGTACCAAAGGTATGGCTGTTAGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTgag                           <  2:1185979/100‑1 (MQ=11)
                                                        tCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTgag                           <  2:4192895/100‑1 (MQ=33)
                                                          gATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGAc                         >  1:29683/1‑100 (MQ=34)
                                                          gATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGAc                         <  1:1213804/100‑1 (MQ=34)
                                                          gATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTAGTGAGAc                         >  2:273619/1‑100 (MQ=18)
                                                           aTGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACa                        <  2:4428708/100‑1 (MQ=33)
                                                             gTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGt                      >  1:711641/1‑100 (MQ=21)
                                                             gTCGGCTCAACGCATCCTGGAGCTTAAGTAGGTCAAAAGCGTATGGTTGTTGGCCATTTAAAGTGGTACGCGAGCTCGGTTTAGAACGTCGTGAGGCAGt                      <  2:243662/100‑1 (MQ=11)
                                                                ggCTCATCACATCCTGGAGCTGAAGTAGGTCCTAAAGGTATGGCTGTTGGCCATGTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCg                   <  2:2916736/100‑1 (MQ=11)
                                                                ggCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCg                   >  2:3384783/1‑100 (MQ=34)
                                                                ggCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCg                   >  1:2248912/1‑100 (MQ=34)
                                                                ggCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCCCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCg                   >  2:3477231/1‑100 (MQ=18)
                                                                 gCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCgg                  >  2:2054314/1‑100 (MQ=34)
                                                                 gCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCgg                  <  2:2630904/100‑1 (MQ=21)
                                                                 gCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCga                  <  2:2334863/100‑2 (MQ=19)
                                                                 gCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCATGAGACAGTTCgg                  <  2:650225/100‑1 (MQ=255)
                                                                  cTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGt                 <  2:1808267/100‑1 (MQ=21)
                                                                   tcatcaCATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTc                >  2:1052657/1‑100 (MQ=33)
                                                                   tcatcaCATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTc                <  1:969239/100‑1 (MQ=33)
                                                                    catcaCATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTcc               >  1:4341057/1‑100 (MQ=34)
                                                                     atcaCATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTccc              >  2:3967191/1‑100 (MQ=34)
                                                                     atcaCATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTccc              >  2:1378422/1‑100 (MQ=34)
                                                                     atcaCATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTccc              <  2:1197625/100‑1 (MQ=21)
                                                                          aTCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCt         >  1:930036/1‑100 (MQ=34)
                                                                          aTCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCt         >  1:332274/1‑100 (MQ=34)
                                                                           tCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTg        <  1:1447633/100‑1 (MQ=34)
                                                                            ccTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTgt       >  1:2891346/1‑99 (MQ=19)
                                                                             cTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGcc      >  2:81651/1‑100 (MQ=33)
                                                                             cTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGAGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGGCCCTATCTGcc      >  1:1911972/1‑100 (MQ=16)
                                                                             cTGGAGATGAAGTAGGGCCGAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGcc      <  2:3093383/100‑1 (MQ=11)
                                                                              tGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCg     <  1:820289/100‑1 (MQ=34)
                                                                                gAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTg   >  2:3174868/1‑100 (MQ=32)
                                                                                 aGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATCTAAAGTGGTACGCGAGCTGGGTTTAGTACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTgg  >  1:1993500/1‑100 (MQ=11)
                                                                                                   |                                                                                 
GGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGG  >  NC_000913/3946147‑3946327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑