Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,148,0100CA48.7% 43.1 / inf 234G103V (GGC→GTC) yijOAraC family putative transcriptional activator
Reads supporting (aligned to +/- strand):  ref base C (46/74);  new base A (51/63);  total (97/137)
Fisher's exact test for biased strand distribution p-value = 3.54e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 239 total aligned reads displayed.

GGCTGCATTTGCATTTCATTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATTGTGGAAAATTCCAGCCACCAG  >  NC_000913/4147911‑4148109
                                                                                                   |                                                                                                   
ggCTGCATTTGCATTTCATTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGc                                                                                                     >  2:1860358/1‑100 (MQ=255)
     catttgcatttCATTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATcc                                                                                                <  2:2252510/100‑1 (MQ=255)
      atttgcatttCATTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATccc                                                                                               <  2:3922449/100‑1 (MQ=255)
      atttgcatttCATTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATccc                                                                                               >  1:4576406/1‑100 (MQ=255)
       tttgcatttCATTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCa                                                                                              >  2:2934967/1‑100 (MQ=255)
        ttgcatttCATTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCAt                                                                                             <  1:4365682/100‑1 (MQ=255)
        ttgcatttCATTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCAt                                                                                             <  1:1799041/100‑1 (MQ=255)
         tgcatttCATTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCAtt                                                                                            <  2:4930523/100‑1 (MQ=255)
         tgcatttCATCGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCAtt                                                                                            >  2:3002236/1‑100 (MQ=255)
            atttCATTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCa                                                                                         >  1:2770544/1‑100 (MQ=255)
             tttCATTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCac                                                                                        >  2:2809217/1‑100 (MQ=255)
             tttCATCGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCac                                                                                        <  1:3036234/100‑1 (MQ=255)
             tttCAATGAGCGATTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGTTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCac                                                                                        >  2:4884999/1‑100 (MQ=255)
              ttCATTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCacg                                                                                       <  1:3329841/100‑1 (MQ=255)
              ttCATTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCacg                                                                                       >  1:3686677/1‑100 (MQ=255)
                 aTTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCacgaca                                                                                    >  2:2167661/1‑99 (MQ=255)
                  ttGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGc                                                                                   >  1:3825059/1‑100 (MQ=255)
                   tGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCt                                                                                  <  2:1734246/100‑1 (MQ=255)
                    gAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTg                                                                                 >  2:4772130/1‑100 (MQ=255)
                    gAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTg                                                                                 >  1:698526/1‑100 (MQ=255)
                      gCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGaa                                                                               >  1:3550697/1‑100 (MQ=255)
                        gTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGc                                                                             <  2:3707616/100‑1 (MQ=255)
                         tttGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGcc                                                                            >  1:5050607/1‑100 (MQ=255)
                         tttGTAGCAGAAAAGAAACTATGCGTGGGCAGCGTCGGGAGCCGTGTTGCTTCGAACGATTTTGATATTGTTTGCCCTCCCATTGCAAGACGCTggcgcc                                                                            >  2:1250194/1‑95 (MQ=255)
                          ttGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCg                                                                           >  1:3125388/1‑100 (MQ=255)
                          ttGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCg                                                                           <  1:2478029/100‑1 (MQ=255)
                           tGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGTACGACGCTGAAGCCGa                                                                          <  1:1362610/100‑1 (MQ=255)
                            gTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAg                                                                         <  2:1902539/100‑1 (MQ=255)
                            gTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAg                                                                         <  2:594589/100‑1 (MQ=255)
                            gTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAg                                                                         <  1:1611030/100‑1 (MQ=255)
                            gTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAg                                                                         <  1:4453438/100‑1 (MQ=255)
                             tAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGt                                                                        >  2:2660588/1‑100 (MQ=255)
                              aGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGtt                                                                       >  2:3497377/1‑100 (MQ=255)
                               gCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCCTTGCACGACGCTGAAGCCGAGTTg                                                                      >  2:146343/1‑100 (MQ=255)
                               gCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTg                                                                      >  2:1995308/1‑100 (MQ=255)
                               gCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTg                                                                      >  2:3562030/1‑100 (MQ=255)
                               gCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTg                                                                      >  2:3290434/1‑100 (MQ=255)
                               gCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTg                                                                      <  1:1312784/100‑1 (MQ=255)
                                cAGAAAAGATCCCCAGCGCGGGCCGCGTCGGGAGACGTGTTGCTTCGCCAGATTTTGATATTGCTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGc                                                                     <  2:4388315/100‑1 (MQ=255)
                                cAGAAAAGAACCTAGGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGc                                                                     <  1:3017472/100‑1 (MQ=255)
                                 aGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCt                                                                    >  1:2993287/1‑100 (MQ=255)
                                 aGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCt                                                                    >  1:5162976/1‑100 (MQ=255)
                                  gAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTg                                                                   <  1:3566409/100‑1 (MQ=255)
                                   aaaaGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGt                                                                  >  2:4372979/1‑100 (MQ=255)
                                    aaaGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGtt                                                                 >  2:1787877/1‑100 (MQ=255)
                                    aaaGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGtt                                                                 >  2:757411/1‑100 (MQ=255)
                                     aaGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGttt                                                                <  2:687858/100‑1 (MQ=255)
                                      aGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTg                                                               <  1:4256/100‑1 (MQ=255)
                                      aGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTg                                                               <  1:1490392/100‑1 (MQ=255)
                                        aaCCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGcc                                                             <  1:3373771/100‑1 (MQ=255)
                                         aCCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGGTTTTGATATTGTTTGCCATCTCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCa                                                            <  2:461927/100‑1 (MQ=255)
                                         aCCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGGCa                                                            <  1:1434033/100‑1 (MQ=255)
                                            tATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAAc                                                         <  2:3864573/100‑1 (MQ=255)
                                            tATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAAc                                                         <  2:2172123/100‑1 (MQ=255)
                                             aTGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACa                                                        <  1:181694/100‑1 (MQ=255)
                                             aTGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTCTTTGACATCCCATTGCACCACGCTGAAGCCGAGTTGCTGTTTGCCAAACa                                                        <  1:4962830/100‑1 (MQ=255)
                                              tGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAg                                                       <  2:1172393/100‑1 (MQ=255)
                                                  tGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGGCAAACAGCaac                                                   <  2:3382001/100‑3 (MQ=255)
                                                  tGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACg                                                   <  1:2968015/100‑1 (MQ=255)
                                                  tGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACg                                                   <  2:5001297/100‑1 (MQ=255)
                                                   gggCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGc                                                  <  2:91469/100‑1 (MQ=255)
                                                   gggCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGc                                                  <  1:4849007/100‑1 (MQ=255)
                                                     gCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGGCAAACAGCaagatc                                                >  1:2649025/1‑95 (MQ=255)
                                                     gCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTa                                                >  2:624566/1‑100 (MQ=255)
                                                     gCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTa                                                >  2:4282152/1‑100 (MQ=255)
                                                     gCCGCGTCGCGCGACGTGTTGCTTCCCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGCTGCTCTTTGCCAAACACCACGCTa                                                >  2:2756181/1‑100 (MQ=255)
                                                      ccGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTaa                                               >  2:1669563/1‑100 (MQ=255)
                                                         cgTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAgg                                            <  1:4662321/100‑1 (MQ=255)
                                                         cgTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAgg                                            >  2:4972923/1‑100 (MQ=255)
                                                         cgTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAgg                                            >  1:882514/1‑100 (MQ=255)
                                                           tCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGgta                                          >  1:3658043/1‑100 (MQ=255)
                                                               gCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGtagtag                                      >  1:832493/1‑100 (MQ=255)
                                                               gCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGtagtag                                      >  1:1051774/1‑100 (MQ=255)
                                                                cGACGTGTTGCCTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGTCAAACAGCACGCTAAAGGTAGTAGc                                     <  2:4052658/100‑1 (MQ=255)
                                                                   cGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCggg                                  <  2:1402318/100‑1 (MQ=255)
                                                                   cGTGTTGCTTCCCCAGAGTTGGAGATCGTGTTCCATCCCATTGCACGACTCGGAAGCCGAGTTGCTGTTGGGCAAACAGCACGCTAAAGGTAGTAGCggg                                  <  2:2538449/100‑1 (MQ=255)
                                                                    gtgtTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCgggg                                 <  2:3015594/100‑1 (MQ=255)
                                                                      gtTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGc                               <  2:1504478/100‑1 (MQ=255)
                                                                      gtTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGc                               >  2:4481461/1‑100 (MQ=255)
                                                                      gtTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGc                               >  1:1710823/1‑100 (MQ=255)
                                                                         gCTTCGCCAGATTTTGATAGTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTg                            <  2:362923/100‑1 (MQ=255)
                                                                          cTTCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGc                           >  1:991479/1‑100 (MQ=255)
                                                                           ttCGCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGcc                          <  1:4327568/100‑1 (MQ=255)
                                                                             cGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCGGTTTGCAAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCAt                        <  1:2122593/100‑1 (MQ=255)
                                                                              gCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCAtt                       >  1:4054753/1‑100 (MQ=255)
                                                                              gCCAGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCAtt                       >  1:3225472/1‑100 (MQ=255)
                                                                                 cgATCTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATtgtg                    <  2:823417/99‑1 (MQ=255)
                                                                                 aGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATtgtg                    <  1:2370102/100‑1 (MQ=255)
                                                                                 aGATTTTGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATtgtg                    <  2:3663103/100‑1 (MQ=255)
                                                                                  gATTTTGATATGGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATTGTgg                   <  2:1604075/100‑1 (MQ=255)
                                                                                     tttGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATTGTGGaaa                <  2:2717837/100‑1 (MQ=255)
                                                                                       tGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATTGTGGAAAAt              >  2:3855370/1‑100 (MQ=255)
                                                                                       tGATATTGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATTGTGGAAAAt              >  1:2289337/1‑100 (MQ=255)
                                                                                         atatTGTTTGCCATCCCATTGCACGACGCTGAACCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATTGTGGAAAATTc            >  2:4214951/1‑100 (MQ=255)
                                                                                           atTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATTGTGGAAAATTCCa          <  1:3709596/100‑1 (MQ=255)
                                                                                            ttGTTTGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATTGTGGAAAATTCCAg         >  1:1495023/1‑100 (MQ=255)
                                                                                             tGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATTGTGGAAAATTCCAGc        <  1:1884442/100‑1 (MQ=255)
                                                                                              gTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATTGTGGAAAATTCCAGcc       <  1:1948382/100‑1 (MQ=255)
                                                                                               tttGACATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATTGTGGAAAATTCCAGcca      >  2:4702074/1‑100 (MQ=255)
                                                                                                  gCCATCCCATTGCACGACGCTGAAGCCGAGTTGCAGTTTGCCAAACAGCACGCGAAAGGTAGTAGCGGGGGCTTGCCATTGTGGAAAATTCCAGccacca   >  2:4693214/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
GGCTGCATTTGCATTTCATTGAGCGTTTGTAGCAGAAAAGAACCTATGCGTGGGCCGCGTCGGGCGACGTGTTGCTTCGCCAGATTTTGATATTGTTTGCCATCCCATTGCACGACGCTGAAGCCGAGTTGCTGTTTGCCAAACAGCACGCTAAAGGTAGTAGCGGGGGCTTGCCATTGTGGAAAATTCCAGCCACCAG  >  NC_000913/4147911‑4148109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑