Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,534,1840CA22.6% 472.9 / 133.6 208intergenic (‑131/+246)yjhX/yjhZUPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment
Reads supporting (aligned to +/- strand):  ref base C (83/78);  new base A (22/25);  total (105/103)
Fisher's exact test for biased strand distribution p-value = 6.21e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.46e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 216 total aligned reads displayed.

AACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATG  >  NC_000913/4534085‑4534283
                                                                                                   |                                                                                                   
  atctcAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATtatc                                                                                                   <  1:1014430/96‑1 (MQ=255)
   gTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTcc                                                                                                  <  2:2764971/100‑1 (MQ=255)
   gTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTcc                                                                                                  <  2:3625954/100‑1 (MQ=255)
    tGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCa                                                                                                 <  1:2122967/100‑1 (MQ=255)
     gCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAg                                                                                                >  2:3407529/1‑100 (MQ=255)
      cAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGc                                                                                               <  2:1687188/100‑1 (MQ=255)
       aaaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCa                                                                                              >  1:2981259/1‑100 (MQ=255)
       aaaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCa                                                                                              <  1:4260889/100‑1 (MQ=255)
       aaaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCa                                                                                              <  1:1804580/100‑1 (MQ=255)
        aaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCAt                                                                                             >  1:1606323/1‑100 (MQ=255)
        aaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCAt                                                                                             <  2:34420/100‑1 (MQ=255)
        aaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCAt                                                                                             >  1:3399990/1‑100 (MQ=255)
        aaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCAt                                                                                             >  1:3312049/1‑100 (MQ=255)
        aaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCAt                                                                                             >  1:3109522/1‑100 (MQ=255)
        aaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCAt                                                                                             >  1:5041113/1‑100 (MQ=255)
          cacacCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCa                                                                                           >  2:867809/1‑100 (MQ=255)
          cacacCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCATCa                                                                                           <  2:4821063/100‑1 (MQ=255)
              ccGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGc                                                                                       >  1:4850615/1‑100 (MQ=255)
                gcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCt                                                                                     >  2:1497561/1‑100 (MQ=255)
                   gtgtCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCgg                                                                                  <  2:2596305/100‑1 (MQ=255)
                   gtgtCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCATCAAAGCCTCgg                                                                                  >  1:4609096/1‑100 (MQ=255)
                   gtgtCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCATCAAAGCCTCgg                                                                                  >  1:1979534/1‑100 (MQ=255)
                    tgtCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCggg                                                                                 <  1:788736/100‑1 (MQ=255)
                    tgtCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCATCAAAGCCTCggg                                                                                 <  1:1197112/100‑1 (MQ=255)
                    tgtCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCATCAAAGCCTCggg                                                                                 <  1:1828243/100‑1 (MQ=255)
                     gtCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgt                                                                                >  2:2484697/1‑100 (MQ=255)
                     gtCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCATCAAAGCCTCGGgt                                                                                <  2:4102681/100‑1 (MQ=255)
                       ccGCATTCGATTTCGGCGGATTGATAATCAGTCCGGCATGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttg                                                                              <  2:3740021/100‑1 (MQ=255)
                       ccGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttg                                                                              >  2:668139/1‑100 (MQ=255)
                       ccGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttg                                                                              >  1:360865/1‑100 (MQ=255)
                       ccGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCATCAAAGCCTCGGgttg                                                                              >  2:841202/1‑100 (MQ=255)
                       ccGCATTCAATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttg                                                                              >  2:2357407/1‑100 (MQ=255)
                        cGCATTCGATTTCGGCGCATTGATGATCAGTCCGGCCTGAAAAGGTCGGGGAACTGA‑TATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttgag                                                                            <  2:4921378/100‑1 (MQ=255)
                         gCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttgag                                                                            <  2:289662/100‑1 (MQ=255)
                           aTTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttgagtt                                                                          >  1:1072696/1‑100 (MQ=255)
                           aTTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttgagtt                                                                          >  2:3497720/1‑100 (MQ=255)
                            ttCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttgagttg                                                                         <  1:4810308/100‑1 (MQ=255)
                            ttCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttgagttg                                                                         >  1:622779/1‑100 (MQ=255)
                                aTTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAg                                                                     >  2:2001208/1‑100 (MQ=255)
                                aTTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAg                                                                     <  1:975415/100‑1 (MQ=255)
                                aTTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCATCAAAGCCTCGGGTTGAGTTGaaaa                                                                     >  2:782908/1‑99 (MQ=255)
                                 tttCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCATCAAAGCCTCGGGTTGAGTTGAAAgg                                                                    <  1:1329435/100‑1 (MQ=255)
                                     ggCGCATTGCTAATCAGTCCGGCCTGACAAGGTCGGGGAAATGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGCGTTGAAAGGTAtt                                                                <  2:1256948/100‑1 (MQ=255)
                                      gcgcATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTAttt                                                               <  1:3094031/100‑1 (MQ=255)
                                       cgcATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTa                                                              >  2:4308488/1‑100 (MQ=255)
                                        gcATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTAc                                                             <  2:1670131/100‑1 (MQ=255)
                                         cATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACg                                                            <  2:128695/100‑1 (MQ=255)
                                         cATTGATAATCAGTCCGGCCGGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACg                                                            >  1:4024746/1‑100 (MQ=255)
                                            tGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAg                                                         >  2:4631536/1‑100 (MQ=255)
                                            tGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAg                                                         <  1:900921/100‑1 (MQ=255)
                                             gATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGc                                                        <  1:836655/100‑1 (MQ=255)
                                             gATAATCAGTCCGGCCTGAAAAGGTCGGGAAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGTAGc                                                        <  2:4661453/100‑1 (MQ=255)
                                                 aTCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAat                                                    >  1:4929925/1‑100 (MQ=255)
                                                 aTCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTGGAAAGGTATTTACGGAGCGAat                                                    <  2:3926831/100‑1 (MQ=255)
                                                   cAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAatat                                                  <  1:1519219/100‑1 (MQ=255)
                                                     gTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTa                                                >  2:3665382/1‑100 (MQ=255)
                                                     gTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTATCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTa                                                >  1:2659592/1‑100 (MQ=255)
                                                       ccGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTATATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAac                                              >  2:1462962/1‑100 (MQ=255)
                                                       ccGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAac                                              <  2:3478079/100‑1 (MQ=255)
                                                       ccGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAac                                              <  1:4357198/100‑1 (MQ=255)
                                                        cGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTATATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAaca                                             >  1:4035337/1‑100 (MQ=255)
                                                        cGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAaca                                             <  2:406851/100‑1 (MQ=255)
                                                        cGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAaca                                             <  1:3706069/100‑1 (MQ=255)
                                                        cGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAaca                                             >  1:5103366/1‑100 (MQ=255)
                                                         ggCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAacac                                            <  1:3445544/100‑1 (MQ=255)
                                                          gCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACg                                           >  2:184882/1‑100 (MQ=255)
                                                           ccTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGt                                          >  1:221686/1‑100 (MQ=255)
                                                            cTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTa                                         >  2:4172334/1‑100 (MQ=255)
                                                                aaaGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTta                                     <  1:3894316/100‑1 (MQ=255)
                                                                  aGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTtata                                   >  2:4423823/1‑100 (MQ=255)
                                                                   ggTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATag                                  <  2:1964611/100‑1 (MQ=255)
                                                                   ggTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATag                                  >  1:3171139/1‑100 (MQ=255)
                                                                   ggTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACAAGTAGTTATag                                  >  2:1155790/1‑100 (MQ=255)
                                                                      cGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATaggcg                               >  1:2570216/1‑98 (MQ=255)
                                                                      cGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATaggag                               >  2:4182283/1‑100 (MQ=255)
                                                                      cGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGCTGAGTTGTAAGGTATTTACGGAGCGAATATTAACACGTAGTTATaggag                               <  1:4897887/100‑1 (MQ=255)
                                                                        gggAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAggg                             <  2:3362363/100‑1 (MQ=255)
                                                                        gggAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAggg                             <  1:2513728/100‑1 (MQ=255)
                                                                          gAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGat                           >  2:3682757/1‑100 (MQ=255)
                                                                          gAACTGATTATCGGATGATTACATTCTCCAGCATAAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGATCGAATATTGACACGTAGTCATCGGCgggct                           >  2:3989539/1‑98 (MQ=255)
                                                                               gATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGtt                      >  2:1178230/1‑100 (MQ=255)
                                                                               gATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGtt                      >  1:2345112/1‑100 (MQ=255)
                                                                               gATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGAGatcggaa                      >  1:1954374/1‑95 (MQ=255)
                                                                                 ttATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTc                    <  2:504018/100‑1 (MQ=255)
                                                                                 ttATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTc                    <  1:4375422/100‑1 (MQ=255)
                                                                                 ttATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTc                    <  2:3135686/100‑1 (MQ=255)
                                                                                 ttATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTc                    <  1:3411690/100‑1 (MQ=255)
                                                                                 ttATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTc                    <  1:64491/100‑1 (MQ=255)
                                                                                   ctaggACGATTACATCCCCCCGAATCCACGCCTCGGCTTGAGTTAAAAGGTATTTACGGACCGAATAATAACCCGTAGTCATAGGAGGGATATGTTTCAg                  <  2:3056289/97‑1 (MQ=255)
                                                                                     cGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTa                >  1:3875139/1‑100 (MQ=255)
                                                                                      ggATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAg               >  1:4459754/1‑100 (MQ=255)
                                                                                      ggATGATTACATTATCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAg               >  1:4277443/1‑100 (MQ=255)
                                                                                      ggATGATTACATTATCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATATTTCAGTAg               >  2:1364755/1‑100 (MQ=255)
                                                                                          gatTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTAGTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGaaaa           <  2:4783082/100‑1 (MQ=255)
                                                                                           atTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGaaaaa          >  2:376589/1‑100 (MQ=255)
                                                                                           atTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGaaaaa          >  1:1139906/1‑100 (MQ=255)
                                                                                              aCATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAgtg       >  1:2675334/1‑100 (MQ=255)
                                                                                              aCATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAgtg       <  2:80909/100‑1 (MQ=255)
                                                                                                 ttCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGa    <  2:3311278/100‑1 (MQ=255)
                                                                                                 ttCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGa    <  2:639214/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
AACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATG  >  NC_000913/4534085‑4534283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑