Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,101,5360CA31.7% 159.0 / 16.0 60intergenic (+106/‑154)sodA/kdgTsuperoxide dismutase, Mn/2‑keto‑3‑deoxy‑D‑gluconate transporter
Reads supporting (aligned to +/- strand):  ref base C (6/35);  new base A (19/0);  total (25/35)
Fisher's exact test for biased strand distribution p-value = 8.66e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

TATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCAC  >  NC_000913/4101301‑4101759
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                  
tATGTGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGACTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGCGGGTTTTTTTGTGTGCAGTTTTAAAATAAAAACaa                                                                                                                                                                                                                                  >  2:108897/1‑239 (MQ=255)
   gggCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCGGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGAt                                                                                                                                                                                                                             <  1:701927/239‑1 (MQ=255)
                    aaCATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑GGGGTTTTTTTTGGTCAATTTCAAAAAAAAAACAA‑TAATCCGataaaaaaaaaaaa                                                                                                                                                                                                            >  2:1116675/1‑237 (MQ=255)
                                 ccTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGCTCAATTTTCAAATAAAAAAAA‑AGATCCGATAAAAATAAAACAACGTTTCAATTGa                                                                                                                                                                                               >  1:1380302/1‑239 (MQ=255)
                                    gAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGGTTAATTTTAAAAAAAAAACAA‑AGAACCGATAAAAATAAAACAACGTTTCCAATTAtgt                                                                                                                                                                                            >  2:1114318/1‑239 (MQ=255)
                                         tCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTGTGATCAATTTCAAAATAAAAAAAA‑TAATCCCATAAAAATAAAAAAAAGGTTTAATTTATGT‑GGttt                                                                                                                                                                                      >  1:70542/1‑239 (MQ=255)
                                           cAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑GGGGTTTTTTTTGGTCAAATTTAAAAAAAAAAAAA‑AAAACCCGTAAAAAAAAAAAAAAGATTTTATTGATGT‑GGgtttt                                                                                                                                                                                    >  2:1191741/1‑238 (MQ=255)
                                               aCCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCa                                                                                                                                                                                <  1:59008/239‑1 (MQ=255)
                                                   ccgTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGGTCAATTTCAAAATAAAAAAAA‑AAATCCGATAAAAAAAAAAAAACGGTTCTATTGTTGT‑GGTTTTGTTTACttt                                                                                                                                                                            >  2:312057/1‑239 (MQ=255)
                                                   ccgTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCCCCAACGGCGG‑TGGGTTTTTTTTGTTCTAATTTAAAAAAAAACAAA‑AGAAACGGTAAAAATAAAAAAACTATTTAATTTATTT‑GGTGTTGTTcc                                                                                                                                                                                >  2:422766/1‑234 (MQ=255)
                                                                 ttAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAaatga                                                                                                                                                              <  1:1116675/239‑1 (MQ=255)
                                                                         ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTTTGGTCAAATTTAAAATAAAAAAAA‑AAAACCGATAAAAATAAAAAAACGGTTCAATTGATGT‑GGGTTTGATTACATTTTTTGTTTAAATGAATGTatat                                                                                                                                                      >  2:336845/1‑239 (MQ=255)
                                                                         ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTa                                                                                                                                                                          <  1:868402/219‑1 (MQ=255)
                                                                         ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCCATTTCAAAATAAAAAAAA‑AAATCCGAAAAAAAAAAAACAACGTTTTAATTGATGT‑GGTTTTTATCCATTTTATTTTTTtaattaattgcttt                                                                                                                                                      >  1:1264472/1‑233 (MQ=255)
                                                                                   tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTTGTCAATTTTTAAAAAAAAAAAA‑AGATCCGATAAAAAAAAAACAGAGTTTCAATTGATGT‑GGGTTTTATTACTTTTTTTGATTAaat                                                                                                                                                                >  2:868402/1‑219 (MQ=255)
                                                                                        aaCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACa                                                                                                                                                                                                            <  1:1084996/171‑1 (MQ=255)
                                                                                             ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTGTGATTAATTTTAAAAAAAAAAAAA‑AAATACGATAAAAAAAAAAAAACGTTTTCATTGATTT‑GGGTTTGATTACTTTTATTTATTTAATAAAAGTTTATATTTGTTTTCATTaaaaatg                                                                                                                                  >  2:1507843/1‑234 (MQ=255)
                                                                                             ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑GGGGTTTTTTTTGTTTCATTTTAAAATAAAAAAAA‑AGAACCGATAAAAAAAAAAAAACGTTTTAATTTATTT‑GGTTTTTATTACTTTTTTTTATTAAATGAATGTCTATCTTCGttttccttaac                                                                                                                                      >  2:1593483/1‑227 (MQ=255)
                                                                                                cGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATg                                                                                                                               <  1:1507843/239‑1 (MQ=255)
                                                                                                cGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTTATCAATTTTAAAAAAAAAAAAA‑TAATCCCATAAAAATAAAAAAAAGGTTTAATTGATGTGGGTTTTGTTACATTTTTTTGTTTAATTAAAT‑TCTATCTTTGTTTCCCTTAac                                                                                                                                      >  2:1188084/1‑232 (MQ=255)
                                                                                                   agcagcGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTc                                                                                                                            <  1:1552817/239‑1 (MQ=255)
                                                                                                            aCGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt                                                                                                                                               <  1:804153/211‑1 (MQ=255)
                                                                                                            aCGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAgg                                                                                                                    <  1:1191741/238‑1 (MQ=255)
                                                                                                                tttGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAAtt                                                                                                                <  2:1539716/238‑1 (MQ=255)
                                                                                                                        gAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCa                                                                                                        <  1:336845/238‑1 (MQ=255)
                                                                                                                        gAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCa                                                                                                        <  2:34473/238‑1 (MQ=255)
                                                                                                                                      ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTGTGATCAATTTCAAAATAAAAAAAA‑TGATCCGATAAAAAAAAAAAAACGGTTCAATTGATGT‑GGTTTTTATTACTTTTATTGATTAAATTAATGTTTATCTTCTTTTCCATCAACACTGATGTTCCCTTGAGGAATTACGCATCA‑GCCCTTAAAAaaat                                                                                         >  2:1195960/1‑238 (MQ=255)
                                                                                                                                          cgccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGa                                                                                    <  1:422766/239‑1 (MQ=255)
                                                                                                                                          cgccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGa                                                                                    <  1:891829/239‑1 (MQ=255)
                                                                                                                                           gccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGAc                                                                                   <  1:1593483/239‑1 (MQ=255)
                                                                                                                                                          gCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGataaaaataaaa                                                                                                                                                                                                              <  1:587656/103‑1 (MQ=255)
                                                                                                                                                          gCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACa                                                                                  <  1:540884/225‑1 (MQ=255)
                                                                                                                                                           catataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGTAAATGc                                                                    <  2:929678/236‑1 (MQ=255)
                                                                                                                                                            gTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCa                                                                   <  2:1329631/238‑1 (MQ=255)
                                                                                                                                                             tataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑GGGTTTTTTTGTGGTTAATTTTAAAATAAAAAAAA‑ATAACCGGTAAAAAAAAAAAAGCGGTTTAAATTTTGT‑GGTTTTTTTCACTTTTTTTTATTAAATGAATTTCTTATTTTTTTTTCATCAAAAATGATTATCCCTTTAGGAATTAAGCATTA‑GCCCTTAAAAAAATTCCGACAAGTGATGGGAAAGCAGa                                                                 >  2:107933/1‑239 (MQ=255)
                                                                                                                                                                  gCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑GGGGTTTTTTTTGGTTAAATTTTAAAAAAAAAAAA‑TAATCCGGTAAAAATAAAACAACGTTTTAATTAATGT‑GGGTTTTATTACTTTTTTTTATTAAATTAATGTCTATCTTTGTTTCCATCAACACTTATGCTCCATTTAGGAAATACGCATTC‑ACCCTTTAAAATATTCCGGCAGGGGAGGGGAAAGCACATaaaa                                                            >  2:959305/1‑239 (MQ=255)
                                                                                                                                                                    cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGGTTAAATTTAAAAAAAAAAAAA‑AGAATCGGTAAAAAAAAAAAAACGTTTCTATTTATGT‑GGGTTTTATTACTTTTTTTTATTAAAATAAAGTTTATTTTTGTTTTCATCAAAACAGATGGTCCCTTTAGGGAATAAGAATTAGGCCCTTAAAAA‑ATGGCCACAGGGGATggga                                                                        >  2:540884/1‑223 (MQ=255)
                                                                                                                                                                      cATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt                                                                                                                                               <  1:817812/153‑1 (MQ=255)
                                                                                                                                                                      cATATCAGCTTAAAAAACGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGataa                                                                                                                                                                                                                      <  2:1446440/83‑1 (MQ=255)
                                                                                                                                                                       atatCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCt                                                        <  1:312057/238‑1 (MQ=255)
                                                                                                                                                                       atatCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGGTTAAATTTAAAAAAAAAAAAA‑AGAt                                                                                                                                                                                                                             >  2:957384/1‑75 (MQ=255)
                                                                                                                                                                             gCTTAAAAAATGAACCATCGCCAACGGTGG‑AGGGTTTTTTGTGATATACATTACCAAAAACACAACTATTACGAGAAAAA‑AAAACAGGCTTTTAATTTGTGT‑GGCCTTTTTCTCTTTTATTTAATTAAAGGATGTATCTATTTCTTTCCATCAACACTGTTGCTGCTCTTAGGAAATACCACTCA‑GCCCTTTAATACATGCCGACAGGTGATGGGAATCAACATAAAActccggatcaa                                                 >  2:872548/1‑229 (MQ=255)
                                                                                                                                                                                tAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGTTCAATTTTAAAAAAAAAAAAA‑AGATCCGGTAAAAAAAAAAAAACGTTTTTATTTTTGT‑GGGTTTTATTACTTTTATTTATTAAATTAATTTCTATTTTCGTTTTCATTaaaa                                                                                                                                     >  2:817812/1‑151 (MQ=255)
                                                                                                                                                                                tAAAAAACGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTTAAAAAAAAAAAAA‑ATATCCGataaaaaaaaaaaa                                                                                                                                                                                                            >  1:1446440/1‑81 (MQ=255)
                                                                                                                                                                                   aaaaTGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAacac                                                                                                                                    <  1:1109441/151‑1 (MQ=255)
                                                                                                                                                                                      aTGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATccc                                        <  1:107933/239‑1 (MQ=255)
                                                                                                                                                                                          aCCATCGCCAACGGCGG‑TGTTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCgggg                                    <  1:108897/239‑1 (MQ=255)
                                                                                                                                                                                          aCCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCgggg                                    <  2:1606673/239‑1 (MQ=255)
                                                                                                                                                                                             aTCGCCAACGGCGG‑TGGTTTTTTTTTGGTTAAATTTAAAAAAAAAAAAA‑AGATACGATAAAAAAAAAAAAGCGGTTTAATTTATGT‑GGGTTTTATCACTTTTTTTTATTAAATGAATGTCTATTTTTGTTTTCATTAACAATGATGCTccc                                                                                                                          >  2:1109441/1‑150 (MQ=255)
                                                                                                                                                                                              tCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGga                                <  1:1114318/239‑1 (MQ=255)
                                                                                                                                                                                                gCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGga                                <  2:585316/237‑1 (MQ=255)
                                                                                                                                                                                                                        gATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTg        >  1:1238112/1‑238 (MQ=255)
                                                                                                                                                                                                                            aaTTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCa   <  1:1039493/239‑1 (MQ=255)
                                                                                                                                                                                                                            aaTTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCa   <  1:449250/239‑1 (MQ=255)
                                                                                                                                                                                                                            aaTTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCa   <  1:959305/239‑1 (MQ=255)
                                                                                                                                                                                                                             aTTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCAc  <  1:1195960/239‑1 (MQ=255)
                                                                                                                                                                                                                             aTTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCAc  <  1:1521589/239‑1 (MQ=255)
                                                                                                                                                                                                                             aTTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCAc  <  1:44937/239‑1 (MQ=255)
                                                                                                                                                                                                                                    aaTAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAaat                                                                                                                                                                >  2:727208/1‑75 (MQ=255)
                                                                                                                                                                                                                                    aaTAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAaat                                                                                                                                                                <  1:727208/75‑1 (MQ=255)
                                                                                                                                                                                                                                            cAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGAtg                                                                                                                                                                                             <  1:1012372/39‑1 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                  
TATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAA‑TGATCCGATAAAAATAAAACAGCGTTTCAATTGATGT‑GGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCA‑GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCAC  >  NC_000913/4101301‑4101759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑