New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4095569 =	154 (1.080)	4 (0.030)	4/328	NT	2.7%	coding (414/1260 nt)	rhaA	L‑rhamnose isomerase
	?	NC_000913	4096314 =	133 (0.950)					coding (1135/1470 nt)	rhaB	rhamnulokinase
Rejected: Frequency below/above cutoff threshold.

CAGGCAATTATCCGGGCAAAGCGCGTAATGCCAGTGAGCTACGTGCCGATCTGGAACAGGCTATGCGGCTGATTCCGGGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4095798‑4095569 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatACAGCAGCGCCAGACTGTCGAAAATGCAGCGCGCCAGTTCAGCATCACTTTCCGGGATCGGTTGCGCCGTTTCCCGACACGCAGCCTGAATTTCGCTGCACATCGTCTCAGGATTAATAAAGCGATCGTCATTGGGATTGATAATGAAGCGGCAAGCCGGAAGTGCCTGTGTCGCGGAGATAAGCGCCGGAAGATCGTTGATTTGCTGCTCCTGAAGCACTCGCTGA  >  NC_000913/4096314‑4096540                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGGCAATTATCCGGGCAAAGCGCGTAATGCCAGTGAGCTACGTGCCGATCTGGAACAGGCTATGCGGCTGATTCCGGGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCG                                                                                                                                                                                                                                        <  2:1557127/227‑1  AGGCAATTATCCGGGCAAAGCGCGTAATGCCAGTGAGCTACGTGCCGATCTGGAACAGGCTATGCGGCTGATTCCGGGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGC                                                                                                                                                                                                                                       >  1:622437/1‑227   GGCAATTATCCGGGCAAAGCGCGTAATGCCAGTGAGCTACGTGCCGATCTGGAACAGGCTATGCGGCTGATTCCGGGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCAT                                                                                                                                                                                                                                     <  2:621418/228‑1    GCAATTATCCGGGCAAAGCGCGTAATGCCAGTGAGCTACGTGCCGATCTGGAACAGGCTATGCGGCTGATTCCGGGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCAT                                                                                                                                                                                                                                     <  1:323662/227‑1         TATCCGGGAAAAGCGCGTAATGCCAGTGAGCTACGTGCCGATCTGGAACAGGCTATGCGGCTGATTCCGGGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGGCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCA                                                                                                                                                                                                                                      <  1:866371/221‑1                                     AGCTACGTGCCGATCTGGAACAGGCTATGCGGCTGATTCCGGGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCA                                                                                                                                                                                                                                      >  1:1810978/1‑193                                      GCTACGTGCCGATCTGGAACAGGCTATGCGGCTGATTCCGGGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCAT                                                                                                                                                                                                                                     <  2:1807779/193‑1                                                                TGCGGCTGATTCCGGGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCATACAGCAGCGCCAGACTGTCGAAAATGCAGCGCGCCAGTTCAGCATCA                                                                                                                                                                                      >  1:1834115/1‑214                                                                 GCGGCTGATTCCGGGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCATACAGCAGCGCCAGACTGTCGAAAATGCAGCGCGCCAGTTCAGCATCAC                                                                                                                                                                                     <  2:1830870/214‑1                                                                                                                    ATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCATACAGCAGCGCCAGACTGTCGAAAATGCAGCGCGCCAGTTCAGCATCACTTTCCGGGA                                                                                                                                                                            >  1:1661094/1‑172                                                                                                                     TCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCATACAGCAGCGCCAGACTGTCGAAAATGCAGCGCGCCAGTTCAGCATCACTTTCCGGGAT                                                                                                                                                                           <  2:1658159/172‑1                                                                                                                                                                                                                                   GCATACAGCAGCGCCAGACTGTCGAAAATGCAGCGCGCCAGTTCAGCATCACTTTCCGGGATCGGTTGCGCCGTTTCCCGACACGCAGCCTGAATTTCGCTGCACATCGTCTC                                                                                                                        <  1:37895/113‑1                                                                                                                                                                                                                                    CATACAGCAGCGCCAGACTGTCGAAAATGCAGCGCGCCAGTTCAGCATCACTTTCCGGGATCGGTTGCGCCGTTTCCCGACACGCAGCCTGAATTTCGCTGCACATCGTCTCAGGATTAATAAAGCGATCGTCATTGGGATTGATAATGAAGCGGCAAGCCGGAAGTGCCTGTGTCGCGGAGATAAGCGCCGGAAGATCGTTGATTTGCTGCTCCTGAAGCACTGGCT    >  1:790541/1‑228                                                                                                                                                                                                                                     ATACAGCAGCGCCAGACTGTCGAAAATGCAGCGCGCCAGTTCAGCATCACTTTCCGGGATCGGTTGCGCCGTTTCCCGACACGCAGCCTGAATTTCGCTGCACATCGTCTCAGGATTAATAAAGCGATCGTCATTGGGATTGATAATGAAGCGGCAAGCCGGAAGTGCCTGTGTCGCGGAGATAAGCGCCGGAAGATCGTTGATTTGCTGCTCCTGAAGCACTCGC     <  2:1652289/226‑1                                                                                                                                                                                                                                      TACAGCAGCGCCAGACTGTCGAAAATGCAGCGCGCCAGTTCAGCATCACTTTCCGGGATCGGTTGCGCCGTTTCCCGACACGCAGCCTGAATTTCGCTGCACATCGTCTCAGGATTAATAAAGCGATCGTCATTGGGATTGATAATGAAGCGGCAAGCCGGAAGTGCCTGTGTCGCGGAGATAAGCGCCGGAAGATCGTTGATTTGCTGCTCCTGAAGCACTCGCTGA  >  1:321532/1‑228                                                                                                                                                                                                                                      TACAGCAGCGCCAGACTGTCGAAAATGCAGCGCGCCAGTTCAGCATCACTTTCCGGGATCGGTTGCGCCGTTTCCCGACACGCAGCCTGAATTTCGCTGCACATCGTCTCAGGATTAATAAAGCGATCGTCATTGGGATTGATAATGAAGCGGCAAGCCGGAAGTGCCTGTGTCGCGGAGATAAGCGCCGGAAGATCGTTGATTTGCTGCTCCTGAAGCACTCGCTG   >  1:1343091/1‑227                                                                                                                                                                                                                                      TACAGCAGCGCCAGACTGTCGAAAATGCAGCGCGCCAGTTCAGCATCACTTTCCGGGATCGGTTGCGCCGTTTCCCGACACGCAGCCTGAATTTCGCTGCACATCGTCTCAGGATTAATAAAGCGATCGTC                                                                                                   >  2:283843/1‑131                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGGCAATTATCCGGGCAAAGCGCGTAATGCCAGTGAGCTACGTGCCGATCTGGAACAGGCTATGCGGCTGATTCCGGGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4095798‑4095569 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatACAGCAGCGCCAGACTGTCGAAAATGCAGCGCGCCAGTTCAGCATCACTTTCCGGGATCGGTTGCGCCGTTTCCCGACACGCAGCCTGAATTTCGCTGCACATCGTCTCAGGATTAATAAAGCGATCGTCATTGGGATTGATAATGAAGCGGCAAGCCGGAAGTGCCTGTGTCGCGGAGATAAGCGCCGGAAGATCGTTGATTTGCTGCTCCTGAAGCACTCGCTGA  >  NC_000913/4096314‑4096540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.