mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,161,142 | 0 | C | A | 23.7% | 83.8 / 11.2 | 38 | Q7K (CAA→AAA) | fabR | transcriptional repressor of fabA and fabB |
| Marginal new junction evidence (lowest skew 10 of 43 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3563404 = | 28 (0.630) | 6 (0.140) | 6/284 | 3.7 | 18.9% | coding (1392/1506 nt) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| ? | NC_000913 | 3563422 = | 25 (0.590) | coding (1410/1506 nt) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding | |||||
| * | ? | NC_000913 | = 2170358 | 6 (0.130) | 6 (0.150) | 5/272 | 4.0 | 52.3% | noncoding (188/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 2170558 | NA (NA) | noncoding (388/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 1095115 = | NA (NA) | 6 (0.150) | 5/272 | 4.0 | 52.3% | noncoding (388/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | 1095315 = | 6 (0.130) | noncoding (188/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 670713 = | 34 (0.760) | 6 (0.150) | 5/276 | 4.0 | 15.9% | coding (893/1032 nt) | holA | DNA polymerase III, delta subunit |
| ? | NC_000913 | 670903 = | 32 (0.770) | coding (703/1032 nt) | holA | DNA polymerase III, delta subunit | |||||
| * | ? | NC_000913 | = 566964 | 3 (0.070) | 6 (0.150) | 5/272 | 4.0 | 68.7% | noncoding (188/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 567164 | NA (NA) | noncoding (388/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 392579 = | NA (NA) | 6 (0.150) | 5/272 | 4.0 | 56.8% | noncoding (388/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | 392779 = | 5 (0.110) | noncoding (188/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315413 | 6 (0.130) | 6 (0.150) | 5/272 | 4.0 | 52.3% | noncoding (185/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315613 | NA (NA) | noncoding (385/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 4498381 | 0 (0.000) | 7 (0.160) | 5/292 | 4.2 | 100% | noncoding (201/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 4498773 | NA (NA) | noncoding (593/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 3186296 | 3 (0.070) | 7 (0.160) | 5/292 | 4.2 | 70.4% | noncoding (201/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 3186688 | NA (NA) | noncoding (593/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 2997099 = | NA (NA) | 7 (0.160) | 5/292 | 4.2 | 87.7% | noncoding (593/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 2997491 = | 1 (0.020) | noncoding (201/1331 nt) | IS2 | repeat region | |||||