New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 551512	NA (NA)	10 (0.110) +TACAACTGCCGCAATGTTTACATCGAACTCCCCTC	8/128	12.6	8.1%	intergenic (+180/+15)	ybcF/purK	putative carbonate kinase/N5‑carboxyaminoimidazole ribonucleotide synthase
	?	NC_000913	4148370 =	175 (1.210)					intergenic (‑53/+162)	yijO/eptC	AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGATCGGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/551470‑551512 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGC  >  NC_000913/4148370‑4148431                                            |||||||||||||||||||||||||||||||||||                                                               cgcggCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACCTGAAAAGTGTGGCC                                          <  2:949980/95‑1   cggCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACCTGAAAAGTGTGGCCTG                                        <  2:888682/97‑1    ggCGGTAGGCTTGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACCTGAAAAGTGTGGCCTGA                                       <  2:2655903/98‑1    ggCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACCTGAAAAGTGTGGCCTGA                                       <  2:3277597/98‑1     gCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACCTGAAAAGTGTGGCCTGAG                                      <  1:1915874/99‑1      CGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACCTGAAAAGTGTGGCCTGAGG                                     <  1:799986/100‑1       GGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACCTGAAAAGTGTGGCCTGAGGG                                    <  1:2660732/100‑1        GTAGGCTGGATAAGGCGTTTACGCCACCTCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACCTGAAAAGTGTGGCCTGAGGGG                                   <  2:1000008/100‑1          AGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACCTGAAAAGTGTGGCCTGAGGGGAG                                 <  1:1431057/100‑1                                         CAATACAACTGCCGCAATGTTTACATCGAACTCCCCTAAGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATCGCGGCAGTTGTATTGC  >  2:1032982/1‑100                                            |||||||||||||||||||||||||||||||||||                                                               CGGATCGGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/551470‑551512 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGCCACCTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGC  >  NC_000913/4148370‑4148431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.