| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 678279 = | 135 (0.940) | 36 (0.250) | 21/198 | 11.4 | 21.1% | coding (865/1428 nt) | djlB | putative HscC co‑chaperone, uncharacterized J domain‑containing protein |
| ? | NC_000913 | = 2067353 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CCCTGATCGTTAACCAGATCACGCGCTTCAATCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/678370‑678279‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATGGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGC < NC_000913/2067353‑2067263 gCCTGATCGTTAACCAGATCACGCGCTTCAATCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTG < 1:2952275/99‑1 CCTGATCGTTAACCAGATCACGCGCTTCAATCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGC > 2:2242805/1‑100 TGATCGTTAACCAGATCACGCGCTTCAATCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGA < 2:992957/100‑1 ATCGTTAACCAGATCACGCGCTTCAATCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAAC < 2:2834688/100‑1 TTAACCAGATCACGCGCTTCAATCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGT > 2:2667953/1‑100 GATCACGCGCTTCAATCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGAT > 2:2298834/1‑100 TCACGCGCTTCAATCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATAT > 1:1385402/1‑100 ACGCGCTTCAATCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGA > 1:5654/1‑100 CGCGCTTCAATCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAG < 2:3156009/100‑1 CGCTTCAATCATCATCGCCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAT < 1:3295492/100‑1 TCAATCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATG > 1:2912539/1‑100 TCAATCAGCATCACCAGTAATGGGTAATAATCGGCCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATG < 2:1775930/100‑1 ATCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTT > 1:3599143/1‑100 TCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTG < 1:1879327/100‑1 TCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTG < 1:2074935/100‑1 CATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT < 1:3469342/100‑1 ATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTC > 1:2819561/1‑100 TCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT > 1:2335312/1‑100 CACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTG > 2:2278291/1‑100 ACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGG > 1:1857974/1‑100 CCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA > 2:1573115/1‑100 AATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 1:545142/100‑1 ATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATa < 1:1214741/100‑2 GGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGA < 2:12510/100‑1 AATAAGCGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG > 2:1032666/1‑100 TCGACCCGCTGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTC < 1:2995125/100‑1 CGACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCA > 1:1276261/1‑100 GACCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT > 2:954751/1‑100 CCCGATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCA < 1:806191/100‑1 ATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAG < 1:2704224/100‑1 ATGCTGACGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAG < 1:568926/100‑1 CGGCACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAA > 1:2543240/1‑100 ACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTA < 2:1362963/100‑1 ACCATTGCAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTA < 2:938161/100‑1 ATTTCAACATTAAGGAACGTGCGAACAATTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCT < 2:2870311/100‑1 CAACATTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGC > 1:3375507/1‑100 CCCTGATCGTTAACCAGATCACGCGCTTCAATCATCATCACCAGTAATGGGTAATAATCGACCCGATGCTGACGGCACCATTGCAACATTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/678370‑678279‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATGGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGC < NC_000913/2067353‑2067263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |